Nelumbo nucifera (sacred lotus): 104612719
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Entry
104612719 CDS
T04131
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104612719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104612719
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104612719
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104612719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104612719
NCBI-ProteinID:
XP_010278568
UniProt:
A0A1U8BBB6
LinkDB
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Position
Un
AA seq
619 aa
AA seq
DB search
MAGILNSGSSSNLPETTGRPFATSFSVQSGSAGPVFHHTGTMQGLHNIHGSFNIPNMQGT
LVSRNSAMNAVPSNGVQQPAGSLSNGRYTSNNIPIALSQMAHGSSHGHSGVTSRGGLGVS
PILGNTGPRVTSSVGNIIGGGSSMSRSLSSGGGLSVPALASRLNLMGGNGSGNLGVQGPN
RLMSGVLQQAPQVISMLGNSYSAAGGPLSQNQVQAGNNQLRSMGMLNDVNSNENSPFDIN
DFPQLTGRPSSAGGPQGQLGSLRKQSVGVVQQNQEFSIQNEDFPALPGLKGGNNDYGMDL
HQKEQLNDNAMSMLHSQHFSMARSPGFSLGGTYSSHRQQQQQHTASAGSGGVSFASANNQ
DLLHLHGSDIFPSRSSYHSQVQSGPPNIGLRPVNSPNSVSGLGSYDQLIQQYQQLQSQSQ
FRLQQISAVGQSYRDQSVKPMQTVADRFGLLGLLSVIRMNNPDLTSLALGTDLTTLGLNL
SSTNDIHKRFASPWSDEPAKGEPEYTLPECYYAELPPVLHQGYFAKFQLETLFYIFYSMP
KDEAQLYAANELYTRGWFYHKELRLWFIRVPNMEPLVKTNTYERGSYLCFDPNTWETVRK
DNFILYYELVEKRPTLPQH
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggctgggatacttaattcaggttcatcttcaaatcttccagagaccactggaagacct
tttgcaacatctttttctgttcaatctggttctgctggccctgtttttcatcacactgga
accatgcaaggactgcataatattcatgggagcttcaatattcccaacatgcaaggaaca
cttgtatcaagaaactcagcgatgaatgctgtcccttcaaatggtgttcaacagcctgca
ggaagtctttctaatggaagatatacctcaaacaatattcccattgctctttcccagatg
gctcatggaagctcgcatggacattcgggtgtcacaagtagaggaggattgggagtatct
ccaattttaggaaacacaggtccacgagttaccagctcggtgggaaacattattggtggt
ggcagcagcatgagtaggagcttaagttctggtggaggattatctgtacctgctcttgca
tctcgcttaaatttaatgggtggcaatggatctgggaaccttggtgtacaaggacctaac
agattaatgagtggtgtgctccaacaagcaccacaggtgatatctatgctaggaaattct
tattctgctgctggaggtccactgtcccaaaaccaagtgcaagcagggaataaccaatta
agatctatgggaatgctaaatgatgtcaactccaatgaaaattctccttttgacattaat
gatttccctcagttgactggacgtcctagttctgctggaggtcctcaaggacaactaggt
tcactacgaaagcaaagcgttggtgttgtccaacaaaaccaagaatttagcattcaaaat
gaagattttccagctttacctggtcttaaaggtgggaacaatgattatggaatggatctg
caccaaaaagaacaacttaatgacaatgcaatgtctatgttgcattcccaacacttctct
atggcgagatctcctggcttcagcttaggagggacatattcatctcatcgccagcaacaa
cagcaacatactgcatcagcaggtagtggtggtgtatcctttgcttctgcaaacaatcaa
gatcttctgcatttacatggttctgatatatttccatcccgctcaagctatcactcacag
gttcagagtggcccaccaaacattgggttaagacctgtgaactccccaaattcagtttct
ggtctagggtcatatgaccagcttattcagcagtatcaacagcttcaaagccagtcccag
tttcgactacaacaaatttcggctgtgggtcagtcatatagggatcagagtgtgaagcca
atgcagacagtggctgatcgatttggtttgcttggtttgttgagtgtcataaggatgaat
aatcctgatttgacctcccttgctctaggaactgatctgacaacattagggctaaatttg
agttcaactaatgacattcacaaaagatttgcttcgccttggtcagatgaacctgccaag
ggggagcctgagtacaccttgccagagtgttactatgcagaactgccacctgtgctacat
caagggtattttgcaaaattccagctagagacattgttttatatcttttacagtatgcca
aaagatgaggcccagttgtatgctgccaatgaattgtacacaagagggtggttctatcac
aaagagcttcggctatggttcataagggttccaaatatggagcctttggttaagactaac
acatacgaaagaggatcttatctctgttttgatccaaacacatgggagacagttcgaaag
gataactttatactttattacgaattggtagagaagaggccaaccctacctcaacactag
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