Nelumbo nucifera (sacred lotus): 104612860
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Entry
104612860 CDS
T04131
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
nnu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104612860
09123 Folding, sorting and degradation
03018 RNA degradation
104612860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104612860
03041 Spliceosome [BR:
nnu03041
]
104612860
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104612860
mRNA degradation factors
5'-3' decay
Lsm complex
104612860
Spliceosome [BR:
nnu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104612860
Complex C
U2 snRNP components
104612860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
104612860
NCBI-ProteinID:
XP_010278777
UniProt:
A0A1U8BN09
LinkDB
All DBs
Position
Un
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIDLLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcgtatttcaaggatttggtgggcagagaagttactgtcgaattgaag
aatgacctcgcaataagggggactctacattccgtcgatcagtacctgaatataaagctc
gagaacactagagtggttgatcaagacaagtatcctcacatgctttcagtaagaaactgc
ttcataaggggatcggtggttagatatgttcaactacctccagacggagttgatatcgat
ctgcttcacgatgcgacaaggagagaagctcgtggtggctga
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