KEGG   Nelumbo nucifera (sacred lotus): 104612860
Entry
104612860         CDS       T04131                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03018  RNA degradation
nnu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104612860
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104612860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nnu03019]
    104612860
   03041 Spliceosome [BR:nnu03041]
    104612860
Messenger RNA biogenesis [BR:nnu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104612860
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104612860
Spliceosome [BR:nnu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104612860
 Complex C
  U2 snRNP components
    104612860
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 104612860
NCBI-ProteinID: XP_010278777
UniProt: A0A1U8BN09
LinkDB
Position
Un
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIDLLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcgtatttcaaggatttggtgggcagagaagttactgtcgaattgaag
aatgacctcgcaataagggggactctacattccgtcgatcagtacctgaatataaagctc
gagaacactagagtggttgatcaagacaagtatcctcacatgctttcagtaagaaactgc
ttcataaggggatcggtggttagatatgttcaactacctccagacggagttgatatcgat
ctgcttcacgatgcgacaaggagagaagctcgtggtggctga

DBGET integrated database retrieval system