Nelumbo nucifera (sacred lotus): 104613330
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Entry
104613330 CDS
T04131
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104613330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104613330
03012 Translation factors [BR:
nnu03012
]
104613330
Enzymes [BR:
nnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104613330
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104613330
Translation factors [BR:
nnu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104613330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
ABC_tran
AAA_16
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104613330
NCBI-ProteinID:
XP_010279410
UniProt:
A0A822YK69
A0A1U8BQ68
LinkDB
All DBs
Position
Un
AA seq
1212 aa
AA seq
DB search
MPYSAFLRGCLRNGLRLTMSLRPTALHFTIRSYPRKPTTFRTTLFAAMKHRALAYGTVCV
PQRLSSVITCSISPVVFTGSLDFDWREDQGIVLNPRSTPFPYFQTQQLQQNMQYGRYAYD
DYSEDDSDQDVQSTSSQKGSTLDNIDEWKWKLTVLLRNKDEQELVSREKKDRRDFEHLSA
LATRMGLHCRQYEKVVVFSKVPLPNYRSDLDNKRPQREVVIPFGLQRRVDVHLREHLYRK
HKNKGTFSDVAFSRSSSSGSIATDEGLFEQHEPLAPTSVVMEKILRRRSLQLRNQQQAWQ
ESPEGQKMQEFRRSLPAYKERDALLNDISQNQVVIISGETGCGKTTQLPQYILESEIDAA
RGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGIL
LRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNADLFS
SYFGGAPVLHIPGFTYPVRTHFLENVLEMTGYRLTQYNQIDDYGHDKAWKMQKQALRKRK
SQIASVVEDALEAADFREYSLQTRESLHCWNPDSLGFNLIEHVLCHICRKERPGAVLVFM
TGWDDINALKEQLQAHPLLGDPSRVQLLACHGSMASTEQRLIFENPEDGVRKIVLATNMA
ETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHL
YPRCLYDAFADYQLPEILRTPLQSLSLQIKSLKLGSISEFLSRALQSPEPLSVQNAIEYL
KTIGALDEDENLTVLGRHLSMLPVEPKLGKMLILGAIFNCLNPILTVVAGLSVRDPFLMP
FDKKEVAESAKAQFSAQDYSDHLALVRAYDGWKDAERKEGGYEYCWRNFLSLQTMKAIDS
LRKQFISLLKDTGLVDDTTATYNTWSYDEHLIRAIICAGLYPGVCSVVNKEKSVALKTME
DGQVLLYSNSVNARELKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNISRGGLD
GHLKMMGGYLEFFMKPALAETYVNLKRELEELIQSKLLNPNMEMDAYSELLSAVSLLVSE
DQCEGKFVFGRQILKPSKTLAATLLPGMFARNGSAPGSDNSKNQLQTLLIRAGHDAPTYK
TKQLKNNQFRALVEFNGMQFMGQPCNNKKQAEKDAAAEALQWLTGGAQSASEEIDHMSML
LKKSKKKHQRRT
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgccctactccgcttttctgcggggctgcctcagaaacggtcttcgcctgaccatgtct
ctgagaccaacggctctgcatttcacaatccgttcttatccaagaaagcctacgactttc
agaaccacactctttgccgccatgaaacaccgagccctagcctacggtactgtatgcgtt
cctcaacgcctgagctctgtcataacatgctccatttctcccgtagtcttcactggctct
ctcgacttcgattggcgggaggatcaaggtatcgtcttgaaccccaggagcactcctttc
ccttactttcagacgcagcagctgcaacagaacatgcagtatggtaggtatgcttatgat
gattactcggaggatgactctgaccaggacgtccagtcgacttcgtcgcaaaagggttct
actcttgataacattgatgaatggaagtggaagctaaccgtgcttctgcgcaataaagat
gagcaagaattggtatcaagagagaaaaaggaccgacgggattttgagcacctttcagca
ttggctactagaatgggtttacattgtcgtcaatatgaaaaagtggtcgtctttagtaag
gttccactgccgaactacagatctgatttggataacaagcgtccacagagggaggtggtg
ataccatttggtttgcaaagaagagtggatgttcatcttagagagcacctttaccggaaa
cataagaataagggtactttttcagatgttgccttttcaagatcaagcagcagtggcagt
attgctacagatgaagggctttttgagcaacatgagccccttgcaccaactagtgttgtc
atggagaaaatccttaggcggagaagtttgcaactgcgtaatcagcaacaagcttggcag
gaatctccggaaggtcaaaagatgcaagaatttcgtagaagtcttcctgcttacaaagaa
agagatgcattattgaatgacatttcacaaaatcaggttgtgatcatctcaggtgaaact
ggttgtggtaagaccacacaacttcctcaatacattttagaatctgagatagacgctgcc
cgtggagctgtatgtagtattatatgtactcaacctagacgaatatctgccatgtctgtt
tctgaaagagttgcagcagagagaggagagaaattgggtgaatctgttggttataaagtt
cggctagagggtatgaaggggagggacacacgtcttcttttctgtactacaggcatcctg
ctgaggaggttactcgttgatagaaatttgaaaggtgtaactcatgttattgtggatgag
attcatgagcgtgggatgaatgaagatttcctgcttattgtcctaaaagacctccttcct
cgtcggccagatttgagattgattttgatgagtgcaactctaaatgcagaccttttctct
tcctactttggaggagctccagtgctacatattccaggatttacctatccagtacgaact
cattttctagagaatgttctagaaatgactgggtacaggttaacacagtacaaccaaatt
gatgattatggtcatgataaggcatggaaaatgcaaaaacaagctctcagaaagaggaag
agccaaattgcttctgttgttgaggatgcccttgaagctgctgattttagggagtacagc
ctacagacaagggagtctttgcactgttggaatcctgattctttaggttttaaccttata
gaacatgttctttgccatatatgtagaaaagaaaggcctggtgccgtcttggtatttatg
actggttgggatgacataaatgctctgaaggagcaacttcaggctcatcctcttttggga
gacccaagtagagttcagttgcttgcatgccatggttcaatggcaagcacagagcagagg
ttaatatttgaaaatcctgaagatggtgttaggaaaatagtacttgcaaccaatatggct
gaaacaagtatcaccattaatgatgtggtatttgttgtcgactgtggaaaggcaaaagag
acatcatatgatgcattgaataatactccatgtttgcttccttcttggatttcaaaggct
gctgctcgacaaagaagaggaagagctggccgtgttcaacctggcgaatgttaccatctc
tacccaagatgtctatatgatgcttttgcagattatcagctgccagaaattttaaggaca
cccttacaatctctcagtttgcaaattaaaagtctaaagctgggaagcatttcagagttc
ttatctagggcattacagtcacctgaaccattatcagttcaaaatgctatcgaatatctt
aaaactattggggctttggatgaagatgagaatctgactgttctaggacgtcacttgtca
atgcttcctgtggagcccaaacttgggaagatgctcatattaggggctatatttaactgc
ttgaatccaatattgactgttgttgctggtttaagtgtcagagatccatttttgatgcca
tttgacaagaaggaggttgctgagtctgcaaaagcccaattttctgcccaggattacagt
gaccatcttgcacttgtccgggcctatgatggctggaaagatgctgaaagaaaggagggt
ggatatgaatactgctggcggaattttctttcactacaaaccatgaaagctattgattcc
cttcggaagcagttcatttctttgctcaaggatactggtctggttgatgacaccacagcc
acgtacaatacatggagctatgatgagcacctcatccgagcaatcatctgtgctgggctt
tatcctggagtttgttctgttgtgaacaaggaaaagtcagtagcactgaagacaatggaa
gatggacaagtccttttatattctaattcagtcaatgctcgggaactgaaaattccttac
ccatggctagttttcaatgagaaagtgaaagtgaactcagtcttcctacgggattccaca
ggcatatctgattctgtgcttctcctgtttggaggaaacatttccagagggggccttgat
ggacacctgaaaatgatgggaggatatctggagttcttcatgaaacctgccttggcagaa
acatatgttaacctaaagagggaacttgaggaactaattcaaagcaaacttttgaatccc
aatatggaaatggatgcctacagtgagctcctttcagcagtaagcttgcttgtatcagag
gatcaatgcgagggtaagtttgtcttcggccgccagattctaaagccatcaaaaacgttg
gcagcaacactgctaccgggcatgtttgcacgaaatggcagtgcgcctgggagtgataat
tcaaagaatcaattgcaaacattgcttatcagagcaggacatgatgcacccacatacaag
acaaaacaactgaagaacaaccaattccgagcccttgtggaattcaatggcatgcagttc
atggggcagccttgcaacaacaaaaagcaagccgaaaaagatgctgcagccgaggcttta
caatggttgactggtggggcacagtcagcttctgaagagatagatcatatgtctatgctt
ctaaagaaaagcaagaagaaacatcaaagaagaacttga
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integrated database retrieval system
