Actinomadura parvosata subsp. kistnae: BKM31_01140
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Entry
BKM31_01140 CDS
T04759
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
noa
Actinomadura parvosata subsp. kistnae
Brite
KEGG Orthology (KO) [BR:
noa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
noa03016
]
BKM31_01140
Enzymes [BR:
noa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BKM31_01140
Transfer RNA biogenesis [BR:
noa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BKM31_01140
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
Motif
Other DBs
NCBI-ProteinID:
AQZ60303
UniProt:
A0A1U9ZQS3
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Position
complement(256269..257495)
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AA seq
408 aa
AA seq
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MTEERTVEPLLEPREGIPPVIADADGLAEVVARFAAGSGPVAVDAERASGYRYGNRAYLV
QLRRAGAGTALIDPIGCPDLSELDRAVADAEIVLHAASQDLPCLMEVGFRPRVMFDTELA
GRLLGYERVGLGTMVETVLGLRLEKGHSAADWSTRPLPEDWLRYAALDVEVLVELRDVLH
RELAEAGKLEWAREEFAAVLDTPPPAPRSDPWRRTSGIHKVRNVRALAIVRELWTMRDRI
AREADLAPGRVLPDAAIVTAALEGPRTKKALTEISAFTGRSARRHMSDWLAAVARARSLP
DSQLPQPSTPGDGPPPPNRWADRDPAAAKRLAAARAVVAALAEEHHMPTENLLQPDAVRR
LTWEPPSEITEESVTARLRELGARNWQLSLTAAPIAKALARLGTRGEL
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagaacgcacagtggagccgctgctggagccgcgcgaaggcatccctcctgtc
atcgccgacgccgacgggctggcggaggtggtggcgaggttcgccgcgggcagcggtccc
gtcgccgtggacgccgagcgggcctccggctaccgctacggcaaccgcgcctatctcgtg
cagctgcgccgggccggggcgggcaccgcgctgatcgatccgatcggctgccccgacctg
tcggagctcgaccgggccgtggccgacgcggagatcgtgctgcacgccgcctcccaggat
ctgccgtgcctgatggaggtggggttccggccgcgcgtgatgttcgacaccgagctggcc
gggcggttgctcggctacgagcgggtcgggctgggcacgatggtcgagaccgtgctcggc
ctgcggctggagaagggtcattcggcggccgactggtccaccaggcccctgccggaagac
tggctgcgttacgccgcgctcgacgtggaggtgctggtcgagctgcgcgacgtgctccac
agggagctggccgaggcgggcaagctggagtgggcgcgcgaggagttcgcggccgtgctc
gacacgccgccgccggcgccgcgctccgacccgtggcggcgcacgtcgggcatccacaag
gtgcggaacgtgcgggcgctggcgatcgtgcgggagctgtggaccatgcgtgaccgcatc
gcccgcgaggcggatctggcgcccggccgggtgctgccggatgcggcgatcgtgacggcg
gcgctggaaggcccccgcacgaagaaggcattgaccgaaatttcggcattcaccgggaga
agtgcgcgcaggcacatgagcgactggctcgcggccgtggccagggcgaggagcctgccc
gacagccagctcccccagcccagcacgcccggcgacggcccgccgccgcccaaccgctgg
gccgaccgcgatccggccgccgccaagcgcctggccgcggcgcgggccgtggtcgcggcg
ctggccgaggagcaccacatgcccacggagaacctgttgcagcccgacgcggtgcgcagg
ctcacctgggagcccccgtccgagatcaccgaggagagcgtcacggcccggctgcgcgag
ctcggcgcccgcaactggcagctctcgctcacggcggcccccatcgccaaggccctggcc
aggctcggcacgcgcggcgagctctaa
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