Actinomadura parvosata subsp. kistnae: BKM31_33980
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Entry
BKM31_33980 CDS
T04759
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
noa
Actinomadura parvosata subsp. kistnae
Pathway
noa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM31_33980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noa03019
]
BKM31_33980
Messenger RNA biogenesis [BR:
noa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKM31_33980
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AQZ65806
UniProt:
A0A1V0A6G3
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Position
complement(7619304..7620989)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLPEGGLRIVALGGLGEIGRNMAVFEYDGRLLVVDCGVLFPEPDQPGV
DLILPDFEYIRDRLDDVEAVVLTHAHEDHIGAVPYLLRERRDIPLIGSKLTLALIEAKLT
EHRIQPTKLEVVEGERHVFGPFDCEFLAVNHSIPDALAVAIRTPAGIVLHTGDFRMDQLP
SDGRLTDLGGFARLGTEGVDLLMSDSTNAEVPGFVTSEREIGPVIDEVIRTSEQRVIVAS
FASHVHRIQQVIDAAFRHGRKVALVGRSMVRNMGVARDLGYLKVPPELIVDSRDIEEWPP
EDVVLICTGSQGEPMAALSRMANRDHPIRIAEGDTVLLASSLVPGNETAVNKVINGLTRW
GARVVHKGNAKVHVSGHAAAGELLYVLNLTRPSNFMPVHGEWRHLRAHAKLAALTGVPED
HIVIAEDGVVVDLVDGRARIVGAVHAGYVYVDGSSVGEITDTSLKDRRILGDEGFISVVV
VVDSNTGKLTAGPEIHARGSGIDPAQFDEFIPQIERALQEKAADGVVDMQEIRRVVRRTV
GRWVSDTYRRRPMIIPVVLEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccatccgcatcctgagcttgggcccccgccgccgctgccggaaggcggcctgcgc
atcgtcgcgctgggcgggctgggggaaatcggcagaaacatggccgtcttcgaatatgac
ggtcgcctgctggtcgtcgactgcggggtgttgttccccgagccggaccagccgggtgtc
gatctcatcctgcctgacttcgaatacatcagggaccggctcgacgacgtcgaagccgtg
gtgctcacgcacgcccacgaagaccacatcggggcggtgccgtaccttctgcgcgagcgg
cgcgatatcccgctcatcggctccaagctcacgcttgccctgatagaggccaagctcact
gagcacaggatccaaccgaccaagctggaagtcgtcgagggcgaacggcacgtattcggg
ccgttcgactgcgagttcctcgcggtcaaccacagcatccccgacgccttggccgtcgcc
atccggacgccggcgggcatagtcctgcacaccggtgacttccggatggaccagcttccg
agcgacggccggctcaccgacctcggcggcttcgccaggctcggcaccgagggcgtcgac
ctgctgatgtccgactccaccaacgccgaggtgccggggttcgtcaccagcgaaagggag
atcgggccggtcatcgacgaggtgatccgcacgtccgagcagcgggtcatcgtggccagc
ttcgcctcgcacgtccaccgcattcagcaggtcatcgacgcggccttccggcacggccgc
aaggtcgccctggtaggccggtccatggtgcggaacatgggcgtggctcgcgacctcggc
tacctgaaggtcccgccggagctgatcgtcgactcgcgcgacatcgaggagtggccgccg
gaggacgtggtgctcatctgcaccggctcccaaggcgagcccatggcggcgctgtcgagg
atggccaatcgcgatcacccgatccgcatcgccgaaggcgacaccgtcctgctggcgtcg
tcgctcgtgccgggcaacgaaaccgcggtcaacaaggtcatcaacggcctgaccaggtgg
ggcgcccgggtcgtacacaagggcaacgccaaggtgcacgtctcggggcacgcggccgcg
ggcgagctcctgtacgtactcaacctgacgcgtccctcgaacttcatgcccgtgcacggc
gagtggcgccacctccgcgcccacgccaagctggccgccctcaccggcgtgcccgaagac
cacatcgtgatcgccgaggacggcgtcgtggtggacctggtcgacggacgcgcgcggatc
gtcggtgcggtccacgccgggtacgtctacgtcgacggctcgtcggtgggggagatcacc
gacacctccctgaaggaccgtaggatcctcggcgacgagggcttcatctcggtggtcgtg
gtggtcgactcgaacacgggcaagctcaccgccggccccgagattcacgctcgggggtcg
ggcatcgatcccgcccagttcgacgagttcatcccgcagatcgaacgggctctccaggag
aaggccgcggacggcgtggtcgacatgcaggagatccgccgggtcgtccgccgaacggtg
gggcgctgggtgagcgacacctaccggcgccggccgatgatcatccctgtggtgctcgaa
gtctga
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