Actinomadura parvosata subsp. kistnae: BKM31_52070
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Entry
BKM31_52070 CDS
T04759
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noa
Actinomadura parvosata subsp. kistnae
Pathway
noa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKM31_52070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noa03400
]
BKM31_52070
Enzymes [BR:
noa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKM31_52070
DNA repair and recombination proteins [BR:
noa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKM31_52070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
MepB-like
Motif
Other DBs
NCBI-ProteinID:
AQZ68884
UniProt:
A0A1V0AF77
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All DBs
Position
complement(11529304..11530176)
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AA seq
290 aa
AA seq
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MKVPVKVDGRELTLSNLDKVLYPDYGFTKAEVIDYYSRIAPVLLPHLRGRPLTVKRYPNG
VTGQSFFEKNAPDHTPDWVRRVNLPAPGSTKNRETIDFAVVEDLPTLVYYANLAALELHV
PQWRVDEDGRALPPDTLVFDLDPGAPATIVECTRVALLLRDVLKQEGLKALPKTSGSKGM
QLYADWDCREEPSAYAKRLAQLLEKEHPDQIVSVMTKKLRPGKVFIDWSQNNPAKTTVAP
YSLRAKDQPTVSTPLTWKEVESCEHPDDLVFTAPDALARVEKRGDLFGRA
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggtgccggtcaaggtggacggccgcgagctgaccctgagcaacctcgacaaggtg
ctctacccggactacggcttcacgaaggccgaggtcatcgactactacagccgcatcgcc
cccgtcctgctgccccacctgcgcggccgccccctgaccgtcaagcgctacccgaacggc
gtcaccggacagtccttcttcgagaagaacgcccccgaccacacccccgactgggtccgg
cgcgtgaacctgcccgccccgggcagcaccaagaaccgcgagaccatcgacttcgccgtc
gtggaggacctgcccacgctcgtctactacgcgaacctggccgccctggagctccacgtg
ccgcagtggcgggtggacgaggacggccgggcgctgccacccgacacgctcgtgttcgac
ctcgaccccggggcacctgcgacgatcgtcgagtgcacgcgcgtggcgctcctgctgcgc
gacgtactgaagcaggaagggctgaaagccctgccgaagaccagcgggagcaagggcatg
cagctgtacgcggactgggactgccgcgaggagccgtccgcgtacgccaagaggctcgcc
caactcctggagaaggagcaccccgaccagatcgtcagcgtgatgacgaagaagctgcga
cctggcaaggtgttcatcgactggagccagaacaacccggccaagaccaccgtcgccccc
tactccctgcgggccaaggaccagcccacggtctcgaccccgctcacgtggaaggaggtc
gagagctgtgaacaccccgacgacctggtgttcaccgcgcctgacgccctggccagggtg
gagaagcgcggcgaccttttcggccgggcgtag
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