Nonlabens sp. MB-3u-79: CW736_13695
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Entry
CW736_13695 CDS
T05253
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nob
Nonlabens sp. MB-3u-79
Pathway
nob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CW736_13695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nob03019
]
CW736_13695
Enzymes [BR:
nob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CW736_13695
Messenger RNA biogenesis [BR:
nob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CW736_13695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
HEM4
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUC80365
UniProt:
A0A2K8XBR3
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All DBs
Position
3103658..3104941
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AA seq
427 aa
AA seq
DB search
MTFKELGLVEPILRALQDQGYERPTPIQAQAIPVLLEGKDLLGCAQTGTGKTAAFSIPIV
QDLYNRQPPKGKRRIKTLVVTPTRELAIQIGENFSAYAKYTDIKNTVIFGGVKQTSQVYA
LHQGIDVLVATPGRLLDLINQRYISLDHVEHFVLDEADQMLDMGFIHDIKKLLKLLPQKR
QSLFFSATMPSTIVKLSNEILGNPARVTIEPEKTTAEKVEQRIYHVNKMNKTKLLIDLLS
NELNDATLVFSRTKHGANKIVKDLDKAGIKSAAIHGNKSQAARQRALQQFKDGDLQALIA
TDIAARGIDIDELSYVVNYDLPNVPESYVHRIGRTGRAGASGLAVSFCMLEERPFLKDIE
KLIRTSIHVVEVHEFEFKMEDAAEPSLKKQSGGGGRGRSQGRSNKPKSGGGNSSSRSGGG
NRSNRSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattagggttagtagaacccatcttgcgagctttgcaagaccaagga
tatgaacgtcctacacctatacaagcacaagccattccagtactattagaaggaaaagat
ttattaggctgtgcacagactggaaccggtaaaactgccgcgttttccattcccatcgtt
caagacttatacaaccgccagccgccaaaaggaaaaaggcgcatcaaaacattagtggtt
actcctaccagagaactggctatccaaataggcgagaatttttcagcttacgcaaaatat
accgatattaaaaatacggtcatctttggtggagtgaagcaaacttctcaagtatatgcg
ttgcatcaaggaattgatgtattagttgctactccaggaagattactggatttaatcaat
caacgttacatctcactagatcatgtcgagcattttgtgctggatgaggcagaccagatg
ttggacatgggttttatacacgatatcaaaaagttgttaaagcttttacctcaaaaaaga
cagtcgctattttttagtgctaccatgcctagcaccatcgtaaaactctctaacgagatt
ttaggaaatccagcaagagtaactatagagccagaaaaaacaactgctgaaaaagtagag
caacgtatttaccacgttaataaaatgaacaagaccaagctcttgatcgatttattaagt
aatgaattgaacgatgctaccttagtgttctctagaaccaagcacggagccaataagatt
gtaaaagatctagataaagcgggtattaagagtgccgctatacatggtaataaatctcaa
gctgcaaggcaaagagctttacaacagtttaaagacggagatcttcaagcacttatcgcg
acagatattgctgctcgtggtatagacatcgacgagttgagctatgtagtgaattacgat
ttacctaatgtaccagagtcttatgtacacagaataggaagaactggtagagctggagca
agcggtcttgccgtttccttttgtatgctagaagaacgccctttcttaaaagacatcgag
aagttgatcagaacaagtattcatgttgtggaagtgcacgagtttgaatttaagatggaa
gacgctgcagagcctagtttgaaaaaacaaagtggtggtggtggccgcggtcgttcacaa
ggaagaagtaacaaacctaaaagtggtggcggtaacagttcttccagaagtggtggaggg
aatcgcagcaatcgcagtagatag
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