Nitrosococcus oceani: Noc_0554
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Entry
Noc_0554 CDS
T00281
Name
(GenBank) DNA polymerase A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03030
DNA replication
noc03410
Base excision repair
noc03420
Nucleotide excision repair
noc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Noc_0554
03410 Base excision repair
Noc_0554
03420 Nucleotide excision repair
Noc_0554
03440 Homologous recombination
Noc_0554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noc03032
]
Noc_0554
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_0554
Enzymes [BR:
noc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Noc_0554
DNA replication proteins [BR:
noc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Noc_0554
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Noc_0554
NER (nucleotide excision repair)
GGR (global genome repair) factors
Noc_0554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
HHH_2
DUF1932
Motif
Other DBs
NCBI-ProteinID:
ABA57074
UniProt:
Q3JDM2
LinkDB
All DBs
Position
complement(597587..600298)
Genome browser
AA seq
903 aa
AA seq
DB search
MNMAENPVLILIDGSSYLFRAFHALPSLTTSKGQPTGAIYGVINMLRKLLDEYQPQYIAV
VFDAKGKTFRHELFEQYKDHRPPMPEELACQIQPLHDLIRALGLPLLCVKGVEADDVIGT
LARQATAQRLETLISSGDKDLAQLVNPHVSLVNTMNLSKLDPAGVKAKFNVSPEQIVDYL
ALVGDTVDNIPGIPGIGPKTAAKLLCQYHSLDQIMAYASEIKGKMGESLRSHLTQLPLAK
ELATVRQDLLLDLGPKDLRCAPPNIPALRELYAALEFKSWLRELLDNENAHSSISNSSTN
SAPAYETVFSEESFENWVARLEKAELFAFDLETNNLDYIEAEIVGLSFAIQPHEAMYIPL
GHEDATAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDCNVLANYGIELQGIRHDSMLE
SYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADIS
LQLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKR
LEQEAFELAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQ
LLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSTE
GRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEIFRTP
LEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERYFQRYPGVKAYMENI
CQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQAERTAINAPMQGSAADIIKRAMIHADR
WLQEQKANARMIMQVHDELVFEVAEDKLEATIRAIRENMAAAAQLKVPLIVEIGSGTNWD
EAH
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggcggaaaacccggtgcttattctaatcgacggctcctcctatctctttcgt
gctttccatgcactgccttctttaacgacttctaaaggtcaacctaccggggcaatctat
ggggtcatcaatatgctgcgcaagttacttgatgagtatcagccccaatacatagcggta
gtttttgatgccaagggcaaaacatttcgccatgaactctttgagcagtacaaagaccat
cgccctcctatgccagaggaacttgcctgtcagattcagcccctccacgatctcatccga
gcccttggcttgccgctgctctgtgttaaaggggttgaggctgacgatgtcatcggcacc
ttggcccggcaagcaaccgcgcaacggctggagaccctcatttctagcggcgataaggac
ttagcccagctagtcaatccccatgtgagcctggtcaacaccatgaatctatctaaattg
gaccccgctggcgtaaaggccaaattcaatgtttccccggaacaaatagtcgattaccta
gcactggtgggcgatacggtagacaatatccccggtatccctggcataggtcccaaaaca
gccgccaaactgctctgccaataccacagcctggatcaaatcatggcttatgcctctgaa
attaaaggcaagatgggggaaagtctacgatcccatctcacacaacttcccttggcaaag
gaattggccaccgttcgccaggatctgctcctagatttaggccccaaagacttgcggtgc
gcgccacccaatattcccgccctgcgtgaattgtacgccgccctggaattcaaaagctgg
ctccgtgaactcttggacaatgagaacgcccactcctcaatttctaattcctcaacgaac
tctgctcccgcctatgagaccgtgttttccgaggaaagctttgagaattgggttgcccgc
ctggaaaaggctgaattatttgccttcgatctggaaaccaataacttggactatatagaa
gccgaaatcgtcggtctctcttttgccatccagccccatgaagctatgtatattcccctc
ggtcacgaggatgccaccgcccccccccagctaccccgtgaacaggttttagcgcggctc
aagccactgctagaagaccctcgccacggcaaagtaggacaaaaccttaaattcgattgt
aatgtgctcgccaattacggtatcgaactgcaaggcattcgtcacgactccatgctggaa
tcttatgtgcttgacagtaccgctacccggcacaatatggattctttagccctaaaatac
ctccaacgaactactattacctatgagatggtagcgggcaaaggggccaagcaattaccc
ttcaaccaggttaccattgaaaaggctgccccctatgcggcggaagatgccgatatcagt
ctccagcttcaccattgtttctggccccgcctgcaacaagaagagggtcttcgccagctc
taccaagagctggaaatccccctcatccccgtgctttcccgtatggaacgcaatggagtc
caggtgaatacggagcaacttaaagcccaaagcgatgaattggcagcgcgcttgaagaga
ctcgaacaagaagcttttgaactggctggagagtcctttaatctcgcttcccccaaacag
attcaggccattctctacgagaagttaaaactgccggtaacccgcaaaacccctaccggc
caaccctcgacagcagaaacggtcctgcaggaactggcacttgattaccccctcccccaa
ttgctcctcgaataccgtaccctgagcaagctcaaatccacctatacggatcgcttgccg
ttgcaggtcaactcccatactgggcgagtccatacttcctatcatcaagccgttactgcc
actggacgcctttcttcttccgatcctaacttgcaaaacattcctatccgcagtactgag
ggccggcgaattcgccaagcatttatcgccccacccggttaccgtttggtagccgccgat
tactctcagatcgaattgcgcatcatggcccatctctcggaagatgaaggactgctggct
gctttcgaagcggaagaagatatccaccagcgaacagccaccgaaattttccgcacgccc
ctggaggatgtgactcctgaacaacggcgcagcgctaaggccatcaattttggcctcatc
tatggtatgtccgcccatgggcttggccggcaactgggaatcaaccgtaccgccgcacag
cactatatagaacgctactttcaacgctaccctggcgttaaagcctatatggagaatatc
tgccagcaagcccgccagaaaggttatgtggaaactctctttggccgacggctttatctg
cctgaaatccactcccggcaaacccaacgccgcaatcaggccgaacgcactgccattaat
gcccccatgcagggcagcgcagcggatatcatcaagcgggcaatgatccacgctgaccgc
tggttgcaggaacaaaaagctaacgcccgaatgatcatgcaagttcacgatgagctggtg
tttgaggtggcagaagataagctggaggctacaattagggcaatccgggagaacatggcc
gcagccgcccagctcaaggtaccgttaatcgtggagataggcagtggcactaactgggac
gaagcccactga
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