Nitrosococcus oceani: Noc_0599
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Entry
Noc_0599 CDS
T00281
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03420
Nucleotide excision repair
noc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Noc_0599
03430 Mismatch repair
Noc_0599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_0599
Enzymes [BR:
noc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Noc_0599
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Noc_0599
MMR (mismatch excision repair)
Other MMR factors
Noc_0599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ABA57118
UniProt:
Q3JDH8
LinkDB
All DBs
Position
complement(644991..647144)
Genome browser
AA seq
717 aa
AA seq
DB search
MDISSLLNPLNKAQREAAAAPPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLAV
TFTNKAAGEMRGRIEELLETPVGGMWVGTFHGIAHRLLRAHWQEAQLPQDFQILDSEDQY
RLIRRILQNLNLDESRWPPRQAQWFINSHKDKGLRPQHLEEGTNPHVRQQIRIYHDYQSH
CERSGLVDFAELLLRAHELLRDHAHVLQHYQNRFTHVLVDEFQDTNAIQYAWLRLLAGHQ
GELFIVGDDDQSIYGWRGAQIENIQQLSRDFPAIRTLRLEQNYRSTGVILAAANAVIANN
TERLGKNLWTESEDGEPIQIYQAFNERDEAHFITERIHAWKAQGGMGADTAVLYRSNAQS
RIVEAALVEAGIPYRVHGGLRFFERAEIKDALAYLRLVTHQNDDSAFERIVNTPPRGIGE
RTLSQVREHARQAGVSLWQATVQLVAQQHLPGRSATALRHFHSLMERMATDIMGLSLPAQ
IESVLDHSGLLNHYRKDRGEKSQSRLDNLKELINAASQFKPEDPSLETLSEFLAHAALES
GGTQAEGWEDCVQLMTLHAAKGLEFPLVFMIGMEEGLFPSPQSRNEPGRLEEERRLCYVG
MTRAQRHLYLIYATRRWLYGSDSYPQPSRFLHEIPTELTSEQQPHIDIIHPGGAPQPTAP
VSSIDGFRIGQRVNHPKFGEGVVLNLEGKDNQRRVQVNFIQGGAKWLVVIYANLQII
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcttctttactcaacccactgaataaagcccagcgtgaggccgccgccgcc
ccgccagggcaccatttagtgcttgccggagcaggcagtggcaaaacccgagtcctagtc
catcgaatggcttggctgatccgcagtcaagggattgctcctgtaaatctcctggccgtc
acttttaccaataaggccgccggagaaatgcgggggcgcatcgaggaattactagaaacg
cctgtgggtggcatgtgggtgggaacctttcatggcattgcccaccgcttgttacgggcc
cattggcaagaagcccagcttccccaggactttcaaattctggactccgaggatcaatac
cgcttgatccgccggattttgcagaatctcaatctggatgaaagccgctggccgccacgc
caggcccaatggtttatcaatagccataaagataaagggctccgcccccagcaccttgaa
gagggcactaatccccatgttcggcagcaaattcgtatctatcatgattaccaaagccat
tgcgagcgcagcggtttggtggactttgccgagcttttgttgcgggctcacgaactattg
cgggaccatgcccatgtactccaacactaccaaaaccgttttacccatgttttagtggat
gaattccaagataccaacgccattcagtacgcttggctgcgattattagccggccatcag
ggagaactctttattgtcggtgatgacgatcaatctatctatggctggcggggagcgcag
attgaaaatattcagcagctaagccgggattttcccgctatacggacacttcgcctggaa
caaaattaccgctcaacgggtgttatcctcgctgcggctaatgcagtcattgccaataat
acagagcgtttagggaaaaatctttggacggagagcgaagatggcgagcctattcaaatc
taccaagcctttaatgaacgggacgaagcccattttataaccgaacgtatccatgcctgg
aaagcccaagggggaatgggcgccgataccgctgtactctaccgctccaatgctcaatcc
cgaatagtagaagccgccttggtcgaggcaggaataccctatcgggtccatggggggctg
cggtttttcgagcgggccgaaattaaggatgccctggcttacctgcgtttggtgacccat
caaaatgatgattccgccttcgagcgaattgtcaataccccgccacggggtattggcgaa
agaacgctctcccaagtcagggaacacgcccggcaggcaggggtttccctatggcaggcc
accgtccagcttgtcgcccagcagcacctccctgggcgcagcgctaccgctctgcggcac
tttcactcgcttatggagcgcatggccacagatatcatggggctgtcccttcccgcacaa
attgagagcgtgctcgaccatagtggtttgctcaaccactatcgcaaagaccgcggtgaa
aaatctcaatcacgcctggataacttgaaagagctcattaatgccgcttcccaatttaaa
cccgaagatccaagtctggaaacactatcagaatttttagcccatgctgccctagagtcg
ggggggactcaagctgaaggctgggaggactgcgtgcaattgatgactttgcatgcggcg
aagggattggaattccccctagtatttatgatcggcatggaagaagggctatttccaagc
ccccaaagccgcaatgaaccggggcgactggaagaagaacgccgcctctgctacgtgggg
atgactcgagctcagcgccacctctatctcatttacgcaacgcgccgctggttgtatggt
tcggacagctatccccagccttcccgttttctccatgagattcccaccgagctcacctcc
gagcagcagccccacatcgatattattcatcccggcggtgctccccagcctaccgcacct
gtttcttcgatagatggatttcgaatcggccaacgggtcaaccaccccaagtttggcgag
ggagtcgtattaaatttagagggaaaagacaaccagagacgcgtccaagtcaattttatt
caaggaggggctaaatggctggtggtgatctacgctaacctccaaatcatttaa
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