Nitrosococcus oceani: Noc_0704
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Entry
Noc_0704 CDS
T00281
Name
(GenBank) ATP-dependent dsDNA exonuclease (SbcC)
KO
K03546
DNA repair protein SbcC/Rad50
Organism
noc
Nitrosococcus oceani
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_0704
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Noc_0704
Archaeal homologous recombinant proteins
Noc_0704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_22
ABC_tran
AAA_21
Nuf2_DHR10-like
RsgA_GTPase
nSTAND3
CENP-F_leu_zip
NTPase_1
cobW
AAA_19
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABA57218
UniProt:
Q3JD78
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Position
756326..759601
Genome browser
AA seq
1091 aa
AA seq
DB search
MRIRQVRFKNLNSLVGEWEIDLTHPAFVSDGIFAITGPTGAGKTTILDAICMALYGRTPR
LNKVTKRGNEIMSRQTGECFAEVTFETQTGRYRCHWSQHRARKKPDGELQAPRHEIANAD
SGEIFESKIRGVADQIESATGMDFHRFTRSMLLAQGGFAVFLQAVQDERAPILEQITGTE
IYSQISIRVHERQREEREKLNLLQAETEGIVMLEPEQEQEIGQTLEIKRKEEADLTAKFA
DTGQAMAWLTTIDGLKKEIVNLADEVRKLQNDIEAFRPDREKLNRALSAASLDGAYATLT
AIRKQQVEDREALKAEGEALPGLESSAKEQAESLKSAEQQTARVKEELKVAAPTLQKVRS
LDQELANLKKTAAEDKQDCQQDLEKIDTDKQARLEEQEKRSTAHGNLELVDSYLKEHAQD
EWLISGLAGVEEQVSSLLSRQNEIHQKEIDQDKAAKALEQATKSLDDCQKQSDLRKQALE
DSSKQLQQGKDALSQLLGNRLLREYRTEKETLLREMAFLAKIAELEDHRAKLEDGKPCPL
CGATEHPFAAGNVPVADESEQKIDALTRLISEVEDQETAIKEHEKAESLAHKDLTEAEKQ
ESAAANGRKVAEKALAEVTDSLEKLRADFAERRQAVAAKLLPLGITDIPETDISLLPEIL
RARLKAWQAQVKKKADIEKQITDLDSEVKRLDAVIETQSTALAEKLKRLESLKKELATVS
DERNALYGGKNPDDEERCLNKAVADAEGVERWVREQHNELQQQWKTGKALVESLKKGIDQ
REPELSRLETEFFAALVSVDFSNEEQYLAALLSSERRAELVTTAKDLDDCQTDLKARQKD
RETHLATEMAKKVTDQSIEELESQSKEYENTLKELRDIIASLKHKLSENMAAKERLKEKQ
GAIEAQKKECRRWKNLHELIGSADGKKYRNFAQGLTFEVMVGHANRQLRKMTDRYLLVRD
EAQPLELNVVDNYQAGEIRSTKNLSGGESFIVSLSLALGLSHMASKNVRVDSLFLDEGFG
TLDEEALDTALEALAGLQQDGKLIGIISHVPALKERISSQIQVTPQTGGRSKISGPGCGG
LSAAKWAKEAG
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgagaatacggcaggtacgctttaagaatctgaactcactggtcggcgagtgggaaatc
gacttgacgcacccagccttcgtgtctgatggcatcttcgccattacaggccctactggc
gcgggcaagacgactattctcgatgccatttgtatggctctttacgggcggacgcctcgc
ctaaacaaggtcactaagcgtggcaacgagattatgtcccgccagaccggcgaatgcttt
gcagaggtgaccttcgaaacccagactgggcgttaccgctgtcactggagccagcaccgg
gcacgcaagaagcctgatggcgagctccaggctccgagacacgaaattgccaatgccgat
tccggtgagattttcgaatccaaaatcagaggggtcgcggaccagatcgagtcggctacc
ggtatggatttccaccgttttacccgctccatgttactggcccagggcggctttgccgtg
ttcctccaagcggtgcaggatgagcgggcgccgatccttgagcagatcacgggcacggag
atttacagccagatttccatccgtgttcatgagcgccaacgggaagagcgggaaaaactg
aacctgcttcaggctgaaacggaaggcatcgtgatgcttgagccggaacaggaacaagag
attgggcagacgcttgagataaagcggaaggaagaggcagaccttaccgccaagttcgcc
gacactgggcaggccatggcctggctcaccaccatcgatggtctgaagaaggaaatcgtc
aacctggccgatgaggtgcgcaagctgcaaaacgatatcgaggcgttcagaccggatcgt
gaaaagctcaaccgggctttgagtgctgcctcactggacggcgcatacgcaacgctcaca
gccatccgcaaacagcaggtggaggacagagaagccttgaaagctgagggagaagcgctt
cctggattggaatcctccgccaaggagcaggccgagtcactaaaatcggctgagcaacaa
accgctcgggtcaaagaagagctaaaagttgccgcacctaccttgcagaaggttcgctcc
ctggatcaggagctcgccaatctcaaaaaaactgcggcagaagataaacaggattgccaa
caggatcttgaaaagattgatacagacaaacaagcccggcttgaggagcaggaaaaacgt
tccacggctcacgggaatctggaacttgttgacagctacctcaaggagcatgcacaggat
gaatggctgatcagcggcctggctggtgtggaagaacaggtgagcagcctactctccagg
caaaatgaaatccatcaaaaagagattgaccaggataaggccgcgaaagccttggaacag
gcgacaaagtcactcgacgattgtcagaagcaatctgaccttcggaagcaggcgctggag
gactcatccaaacagcttcagcagggcaaagatgctttgagccagctactggggaaccgc
ttattgcgagaataccgcaccgagaaggaaaccctgctgcgtgaaatggccttcctggcg
aaaatagcggagcttgaagatcaccgggcaaaactggaagatggcaagccctgtccactt
tgcggcgcaaccgagcatcccttcgcggcaggcaatgtccctgttgccgatgaatccgaa
cagaagatcgacgcgttgaccaggctgatcagcgaagtcgaggatcaggaaaccgccatc
aaggaacacgaaaaagctgaaagcttggcccataaggacctgacggaggctgaaaaacag
gagtcagcagcagctaatggcaggaaggttgccgaaaaagcccttgccgaagtgacggac
agcttggaaaaactccgggctgattttgctgaacgcaggcaggccgttgctgccaaactt
ctgccccttggtatcacggacatccctgaaacggatatttcattactacccgaaatcctc
agagcacgactgaaggcgtggcaggcccaggtcaagaaaaaggcggatattgagaaacag
attaccgacctcgacagcgaggtgaaacggctggatgcggtcattgaaacccaaagcacc
gctctggccgaaaagctgaagcgcctggagagcttaaagaaggaactcgccaccgtgagt
gatgagcgaaatgcactgtacggcggcaagaatcccgacgatgaggagcgctgcttgaac
aaggcggttgctgatgcggaaggcgtcgaaaggtgggtcagagagcagcacaatgaactc
cagcaacaatggaaaaccgggaaggcccttgtcgaatcgttgaagaaaggcattgaccaa
cgagagccggaactgagtaggctggaaacagaattcttcgcagcacttgtgtccgtggat
ttttcaaatgaagaacagtatctggcagccctattgtcttcagagcggagggctgagctg
gtgactacggccaaggatctggatgattgccaaacggacctcaaggctaggcaaaaagat
cgggaaacgcacttggctacggaaatggccaaaaaggttactgaccaatctattgaggaa
ctggagtcgcaatccaaggagtatgaaaacacactgaaagagctgcgagatatcattgcc
agtcttaagcataagctcagtgagaatatggctgccaaagagcggctaaaggagaagcaa
ggggctatcgaagcccagaaaaaagaatgtcgcaggtggaagaacctgcatgaattaatc
ggctccgcagatggtaagaagtaccgcaattttgcccaggggttgacctttgaagtgatg
gttggccatgccaaccggcaactgcggaaaatgactgaccgttacttgctagtccgtgac
gaggctcagcccctggagctcaacgtggttgacaattaccaggctggggagattcggtcc
acgaagaacctttccggcggtgaaagctttatcgtcagcctgtccctggcgctgggtttg
tcccatatggccagcaagaatgtccgggtggactcgctgttcctggatgaaggcttcggc
accctggacgaagaagccctcgacaccgccttagaagcccttgcgggcctgcagcaggat
ggcaagctgatcgggatcatttcacacgtacctgccttgaaagaacggattagctcccaa
atccaggtaacacctcaaaccggtggcaggagcaagatatcggggcctggatgcggtggg
ttgagtgctgcaaaatgggccaaagaagcgggttaa
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