Nitrosococcus oceani: Noc_0995
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Entry
Noc_0995 CDS
T00281
Name
(GenBank) Helicase RecD/TraA
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Noc_0995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_0995
Enzymes [BR:
noc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Noc_0995
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Noc_0995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
HHH_2
AAA_22
NTPase_1
Helicase_RecD
AAA
PIF1
PhoH
nSTAND3
UvrD-helicase
RsgA_GTPase
AAA_17
SLFN-g3_helicase
AAA_16
AAA_28
NPHP3_N
AAA_14
ABC_tran
TsaE
T2SSE
KOW6_SPT5
NB-ARC
TrwB_AAD_bind
ATP_bind_1
Motif
Other DBs
NCBI-ProteinID:
ABA57504
UniProt:
Q3JCE2
LinkDB
All DBs
Position
complement(1101776..1103959)
Genome browser
AA seq
727 aa
AA seq
DB search
MNAFHPEASPEFLAGTIERVTFHSEETGFCVLRIKVRGEHNLVTVVGNTATVTPGEYVEC
RGEWINDRTHGLQFKAKHLKVIPPSTLEGIEKYLGSGMVRGIGPHFAKKLVQAFGEQVFE
VIEHTAERLTELDGIGPKRKARVIQSWAEQKAVRAIMVFLQSQGVGSARAVRIYKTYGDH
AIERVRENPYRLALDIHGIGFKTADRIAQRLGIPADSLIRAQAGVRHVLQEFTTEGHCAM
EQDKLVETASKLLEIPVPTIEQAIAQEVTAGQLIAEVIHDKSCLFLTPLYRSETGVAKHL
QRLLQGRPPWGEINTDKAIPWAEEKTGLRLSPSQRAAVTQAVGSKIIVISGGPGVGKTTV
VNSIIRIVQVKQIQIHLGAPTGRAAKRLAESTGFEAKTIHRLLEFNPHAIGFKHHRGNPL
HTDLVIIDEVSMVDVGLMNQLLQAIPSHAACILIGDRDQLPSVGPGQVLADIIASKKITA
VHLTEVFRQAARSKIVVNAHRINQGKMPERTHEAAPLSDFYFIPTESPETIQDRLLELVS
TRIPKRFGFDPIRDIQVLTPMNRGSLGAQALNALLQQQLNAQASPKINRFGWTFALGDKI
IQTVNNYDKEVFNGDIGKITRIDIEESLVYISIDDREVEYELGELDEIALAYAISVHKSQ
GSEYPAVVIPLATQHYTMLQKNLLYTGVTRGKKLVVIVGQPKALAIAVKRTHVTSRLTHL
SARLANG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctttccacccagaagcctcgcctgagttcctcgccggcaccatagaacgggtt
acttttcatagcgaggaaaccggattctgcgtcctgcgaatcaaagtacgtggtgaacac
aatctcgtcaccgtagttggcaataccgctacggtcacgccgggggaatatgtggaatgt
cgcggtgagtggattaacgaccgcacccatggacttcagttcaaagcaaaacatctgaaa
gtcatcccccccagcaccctcgaagggattgaaaaatatctcggctcgggcatggtcagg
ggaatcggcccccacttcgccaagaaactggtgcaagccttcggtgagcaggttttcgaa
gttatcgaacatacagccgagcgcctcaccgaattagacggtatcggccccaagcgcaaa
gcgcgagtcatccagtcctgggcagaacaaaaagcggttcgcgctatcatggtgtttctg
caatcccagggcgtaggcagcgccagggcggttcgtatttataagacctatggcgatcac
gctatcgaacgggttcgcgaaaatccttaccggctggctctagatatccatggcatcggc
tttaaaaccgccgataggattgcccaacgactaggaatccccgccgattctctcatccgc
gcccaggcgggagtccgtcatgtactccaggaatttacgaccgaaggacactgcgcgatg
gagcaggacaagttagtggaaacagctagtaaattactggaaatccctgttcctactatc
gaacaagccattgctcaagaagtcaccgcagggcaactcatcgccgaagttattcatgac
aaatcctgcctctttcttactcccctttatcgctctgaaacgggggtcgccaaacatttg
caacgcctccttcagggtcgtcccccttggggagaaatcaatacggataaggcaatcccc
tgggcggaagagaaaacgggattgcgcctttctccctctcagcgcgcagcggttacacaa
gcagtcggcagcaaaatcattgtcattagcgggggaccgggggtcggtaaaaccactgtc
gtcaatagcattatccgaattgttcaggtcaagcaaatccagatacaccttggggcaccc
accgggcgggcagcaaaacggcttgccgaatcgaccggttttgaagccaaaacaatccac
cgtctgcttgaatttaatcctcatgccataggtttcaagcatcataggggtaaccccctc
catacggatcttgtcattattgatgaagtttccatggtcgacgtgggattgatgaatcag
ctactccaagccatccccagtcatgcggcgtgcatattgataggcgatagagatcagcta
ccttcggtagggccagggcaggtgctagcggatattattgcttccaaaaaaatcaccgct
gtccacctcaccgaggtttttcgccaagcagccagatccaaaatcgttgtcaatgcccat
cgaatcaatcaaggaaaaatgcccgagagaacccatgaagcagccccgctcagcgatttc
tattttattcccaccgagtctcccgaaaccatccaggataggctcctagaattagtaagc
acgcggattcctaaacgcttcggctttgaccccattcgcgatattcaagttcttaccccc
atgaaccgcggcagccttggagcacaggcgcttaatgcgcttctgcaacagcaactcaat
gcccaagccagccccaagatcaaccggttcggttggacctttgccctgggcgataagatc
attcagaccgtcaataattatgataaagaagtcttcaatggagatatcggcaaaataaca
agaatagatattgaggaaagtctcgtgtatatcagcatcgatgaccgagaggtagaatac
gagttaggcgagcttgacgaaattgctttggcctacgctatctcggtgcacaaaagccag
ggttccgaataccccgcagtcgtcattcccctagccacccagcactataccatgctacag
aaaaatctgctctacactggcgttacccggggcaaaaaactggttgtcattgtgggacag
cctaaagcgcttgccattgccgtcaaaaggactcatgtaacctcccgcctgacccacctt
tcagcgcggttagcaaacggttaa
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