Nitrosococcus oceani: Noc_1139
Help
Entry
Noc_1139 CDS
T00281
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
noc
Nitrosococcus oceani
Pathway
noc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Noc_1139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_1139
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Noc_1139
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Noc_1139
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
AAA_22
UB2H
HEM4
DUF87
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ABA57643
UniProt:
Q3JC03
LinkDB
All DBs
Position
1245998..1248061
Genome browser
AA seq
687 aa
AA seq
DB search
MKDIFQLVSDYQPAGDQPEAIERLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRPT
IVLAPNKTLAAQLYSEMREFFPRNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHIE
QMRLSATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAELQ
YQRNDRELYRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEILHRVSR
LTIYPKTHYVTPREVLLQAVDEIKIELAERLEQLYGANKLVEAQRLEQRTRFDIEMILEL
GYCTGIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEWEQLAPQTIFVSATPGPYEQQHSGAVIEQVVRPTGLVDP
AVEVRPAGSQVDDLLSEIRQRTAADERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDID
TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNLHGRAILYGDKVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDGVY
TPGSGKGHRSPDRVEEKAAEYTRLPPQQLAKRLQQLERQMHKHAQNLEFEQAARLRDEIK
RIKGWVFNGADSASAPRQENSQARAIC
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggatatatttcaactggtgagtgattatcagccggcaggggaccagccggaggcg
atagaacggttgacggaaggtctagcggcgggggaaatgtatcagaccctgctgggggtt
accggctcgggcaaaaccttcaccatagccaatatgatccagcaggttcagcggccgact
attgtcttggcgcctaataagactctagcagcccaactctatagcgagatgcgggaattc
ttcccccgcaatgcagtgggttacttcgtgtcttattacgattattatcagccagaggcc
tatgtgccagcttctgatacttatattgggaaagacgcttcggttaacgatcatatagag
caaatgcggctttccgcgactaaggcatttctggagcggcccgatgccattgtggtggca
agtgtctccgctatctacggtcttggcgataaggatagttatctgaatatggtactgcac
cttatggtgggtgatacggtagatcatcggggaatattacgccgcttggcggagttgcag
tatcagcgtaacgatagggaactgtaccggggcacctaccgggtgcggggagagattatt
gatatctaccctgccgaatcggagcaagaggctatccgggtagaactttttgacgatgag
atagagagtctctcttattttgatcccttaacaggtgaaatactgcaccgagtttcccgc
ttgactatttatccaaagacccactatgtgacgccccgagaggttctgttgcaagcagtc
gatgaaattaagattgagcttgctgaacgattggaacagctttatggcgctaataagctt
gttgaagctcagcgcctagagcaacggacccgtttcgatatcgagatgatattagagcta
ggttactgtacgggcattgaaaattattcccgttttctatcccgaaggcagcctggggag
gcgccgccaaccctgtttgattatctccccaagaatgctttgctggttattgatgaaagc
catgtgacggtgccccaattgggcgctatgtaccggggcgatcgggcccgtaaagagacc
ttggttgagtatggtttccgcctaccttcggccttggataaccggcccttaaaatttgag
gaatgggaacagctagcaccccagactatttttgtttcagctacgcctggaccctatgaa
cagcagcattctggggctgtgattgaacaggtagtacgtcccacgggtctggttgatccg
gcggtggaggtgaggcccgccggtagtcaggtagatgatctgctctcggagatccgtcag
cggacagcggcggatgagcgggtgttggtgacggtccttaccaagcgtatggcggaggat
ctgactcagtatctggagcagcatgaggttcgtgtgcgctacctccattcggacattgac
acggtagagcgggtagaaattatccgcgatctgcggttaggtaagtttgatgtgttggtg
ggaatcaacttgctacgggagggattggatattccggaagtgtctttagtagctattttg
gatgcggacaaggaaggttttctccgctcagagcgatccctcattcaaacgataggacgg
gccgcacgcaatttacatggaagagccattctttatggggataaggtcacaggctcgatg
ggccgggccattgccgagacagaaagacggcggaaaaaacagcttgcttttaacgaaacc
catcgtattatccctcgtggtatacaaaaagcggtgcgggaaatcattgatggtgtctat
acgccaggctctggtaaaggccaccgctcccctgaccgggtggaggagaaagccgccgag
tacactcgcctgccacctcaacaattggctaaacgcctacaacaactagagcggcagatg
cataagcatgcccagaatttagagtttgaacaagccgcccggttgcgcgatgaaatcaaa
agaattaagggctgggtctttaacggagccgattccgcctctgctccgaggcaggagaat
tctcaagcgagggcaatttgctag
DBGET
integrated database retrieval system
