Nitrosococcus oceani: Noc_1642
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Entry
Noc_1642 CDS
T00281
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Noc_1642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_1642
Enzymes [BR:
noc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Noc_1642
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Noc_1642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
AAA_30
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABA58114
UniProt:
Q3JAN2
LinkDB
All DBs
Position
complement(1833219..1836695)
Genome browser
AA seq
1158 aa
AA seq
DB search
MPPALNLASLAPVLPRQAGDHHRFGQLYGSSFGLVLAASAYYHPGPILVITPDTITANRL
EDELRFYRNGQEDSPILHFPDWETLPYDTFSPHQDILSERLATLYQLPRLERGILIVPVS
TLMQRLAPQEYLETHSLLVATGDHLHLENWRKQLEKGGYRCVSQVMEHGEFAIRGSLIDL
FPMGSTLPYRIDLFDNEVDSLRSFDPETQRSLQSVAQIQLLPAREFPLVEETITRFRKNY
RGAFNGDPQRSLIYREVSEGHPFPGIEYYLSLFFDHTDTLFDYLPNNTLAVTVEGVNTTA
ESFWREINARYEQYRHDIERPLLPPPKLYLQAGEVFSSLKHLPRISLQSSKVEEKAGYQN
FSTEAPPSLMLNARISQPLKTLNQFIKSFTGRVLFAAETAGRRETLRDLFKDSGIRPHFF
ENWETFLQAEERLGITVAPLQHGLLLSEPRTAVVAESQLFGQQAMQYRRRKERTRDADAV
VRDLVELSIGAPVVHEEHGVGRYLGLQTLEVGKVRTEFMALEYAGGDKLYVPVSSLHLIN
RYTGATPEAAPLHKLGSNHWERAKRKARERVRDVAAELLAIYAQRAARKKLPLPTPDSHY
TAFARAFPFEETPDQADAIQAVIADLTSDQPMDRLVCGDVGFGKTEVAMRATFIVSQAGK
QVAVLVPTTLLAQQHYQSFKDRFADWPARVEVISRFRSRKEQEAVISGIADGRADIVIGT
HKLLQENIRFKNLGLVIIDEEHRFGVRQKERMKALRTEVDILTLTATPIPRTLHMSLSNL
RDLSIIATPPARRLAIKTFVRQWNDNLLREALLREIKRGGQVYFLHNEVESINKMAQRVQ
TLFPEAKVGIAHGQMRERELEQVMLNFYHRRFNVLICTTIIETGIDIPSANTIIIHRADK
LGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAIKRLDAIESLEELGAGFTLASHDM
EIRGAGELLGKDQSGQMQEIGFDLYHDLLERAVNSLKSGQALDLEQPPEQGSEVDLHAPA
LIPEDYLPDVHTRLVLYKRIATAKNHQALTELQVEMIDRFGLLPEATKTLFATHELRLKA
NEIGIRKIEAGAHGGRIHFQSEPKVDPMAIIDLIQTQPSVYKLDGQEKLRFTRKLPTVQA
RLETLEKLLKILIMKKAA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccacctgctttaaatctcgcctctctagcaccagtcttaccccgacaggctggtgac
catcatcgttttggtcaactttacggaagcagttttggtctggtattagcggcctccgcc
tattatcatccgggccctattttggtcataacaccagatacgattacggcaaaccggttg
gaagatgagctccgcttttatcgcaacggccaggaagatagccccatcctccattttcct
gattgggaaactttaccctatgacactttttctccccatcaggatatcctctccgaacgg
cttgccaccctttaccaattacctcgcttagagcgtggtatattgatcgttccagtctcc
accttaatgcagcggctggcgccccaagaatatctagaaacccatagtttactggtggca
actggcgatcaccttcacctggagaattggcgcaagcaactagaaaagggaggatatcgt
tgtgtctcccaggtaatggagcacggcgaattcgccattcggggttccctcatcgacctg
ttccccatgggcagcacgctgccttatcgaatcgatctctttgataatgaagtggatagt
ctccgcagcttcgatccggaaacccagcgctctctgcaatcggtagcacagatccaactg
ctacctgcccgggaatttcccctggtagaagaaacgattacccgattccgaaagaactat
cggggcgcctttaacggtgatcctcagcgcagcttgatttaccgagaggtaagcgaagga
catccttttccaggaatagaatattacctgtcgctttttttcgaccacactgatacccta
ttcgactatctccctaacaatacgctggctgtcactgtggaaggagtcaacaccactgct
gagagtttttggagagagattaatgctcgctacgagcaatatcgccacgatatagagcgc
cctcttctaccccccccaaaactctatctgcaagccggagaggtcttttcctcccttaaa
cacctacctcgaatcagtctacaatcctcaaaagtagaggaaaaagccggttatcaaaat
ttttctactgaggcgccgccctcgcttatgctcaatgcccgtatttcccagccgctgaaa
actctcaaccaatttataaaaagctttacggggcgggtcttatttgccgccgaaaccgca
ggacgccgggaaactttgcgagatttattcaaagacagtggaattcggccccatttcttt
gaaaactgggagacttttctgcaagctgaggaacgtcttggtattaccgttgcgcctcta
cagcatggcttgctgctcagcgagccacggaccgccgtggtcgcggagtctcaattattt
ggccaacaagccatgcagtaccgccgtcgtaaggagcgtacccgtgatgcggatgcggta
gttcgggatttagtagaactctccatcggcgccccagtggtccatgaggaacatggtgtg
ggccgctacttaggactgcagaccctagaagttgggaaagtccgcaccgaatttatggcg
ttggaatacgcaggaggagataagctctatgtccccgtctcttctctccacctgattaac
cgctatactggcgccactcccgaggcggcgcccctgcataaactcggttccaaccattgg
gaacgagccaagcgtaaggcccgggaacgagtccgagatgtagccgccgaactgctagct
atctatgctcagcgggcggctcgaaaaaaactgcccctgcctaccccagattctcactat
accgcctttgctcgcgccttcccctttgaggaaaccccggaccaagcggatgctatccaa
gcggtgattgccgatttgacttcagatcaacccatggatcgcctcgtctgtggagatgtg
ggttttggtaaaactgaagtggcgatgcgggcgaccttcattgtctcacaagcaggcaag
caggtggcagtactggtgcctaccacgctcctggcccagcaacattatcaaagctttaaa
gaccggtttgccgattggccagcgcgggtagaagttatatcccggttccgttcccgcaaa
gaacaagaagcagtgatcagtggtattgctgatggccgagcagatattgtgattggcacc
cataaattgctgcaggaaaatatccgttttaagaatctaggattggtaattatcgatgaa
gaacaccgctttggagtccgacagaaggaacggatgaaggctctacgaaccgaggtggat
attctcaccctaactgcaacccccattccccgaaccctccatatgtctctgtccaatctc
agggatctctccatcattgccacgccaccggcgcggcgtctagctattaaaacttttgtg
cggcaatggaatgacaatcttctccgggaagcattattgcgggaaatcaagcgaggggga
caagtctattttcttcataatgaagtagaaagcattaataaaatggcccagcgagttcaa
accctttttcctgaagccaaagtgggcattgcccatggtcagatgcgggagcgggagcta
gaacaggtgatgctaaatttctatcaccgacgttttaatgtcctgatttgcactactatt
attgaaactgggattgatattcctagcgccaatactatcattatccatcgggccgataaa
ttgggcttagcccaattatatcaactccggggacgagtgggacgctctcaccaccgagcc
tatgcctatctgattgtccctcctcgctcggtcatgaccgcagatgcgatcaaacgccta
gatgccattgagtccctggaagaactaggtgctggttttaccttagctagccatgatatg
gaaatccggggggcgggtgaactactgggtaaagaccaaagcgggcaaatgcaagaaatc
ggctttgatctttaccatgatctgctagaacgggcagtcaatagcttaaagtccgggcaa
gccttggatttagagcaaccaccggaacaaggttcagaggtcgacctccatgctcccgcc
ctgatcccagaagattacctcccggatgtgcatacccgattagtgctctataaacggatc
gccaccgccaaaaatcaccaagcactgacagaacttcaggtagagatgattgatcgcttc
ggtctattgccagaagccactaagactctatttgctacccacgaactccgcttaaaagca
aatgaaatcggtattcgcaagatcgaagcaggtgcccatggcggtcggattcactttcaa
tcggaacctaaagtggatcctatggccattattgatttaattcagacacagcctagcgtt
tataaactcgatggccaggaaaagctgcgctttacccgaaaacttcctacggtccaagca
cgcttagagaccctagaaaaattgctaaaaatactgatcatgaaaaaagcagcctag
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