Nitrosococcus oceani: Noc_2300
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Entry
Noc_2300 CDS
T00281
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Noc_2300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noc03021
]
Noc_2300
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_2300
Enzymes [BR:
noc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Noc_2300
Transcription machinery [BR:
noc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Noc_2300
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Noc_2300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Helicase_Sgs1
Av_adeno_fibre
Motif
Other DBs
NCBI-ProteinID:
ABA58758
UniProt:
Q3J8T8
LinkDB
All DBs
Position
complement(2651873..2652871)
Genome browser
AA seq
332 aa
AA seq
DB search
MQVSNFLKPRIVDVQRINDYATKVTLEPLERGFGHTLGNALRRILLSSMPGCAIIEAQID
GVLHEYTTKEGVQEDMTEILLNLKGVAVKLHGRDEVTLNLSSKGPVTVTAGDIQLEHDVE
VINPEHVIAHLTKSGELNLTMKVVRGRGYQSASMRIPKEEDERSIGHLILDASFSPIRRV
TYEVDSARVEQRTDLDKLIIEIETNGTIAPDEAVRKAATILQDQLTAFVELEGKIETAKE
KKAAEIDPVLLQPIDDLELTVRSANCLKAENIYYIGDLIQKTEVELLKTPNLGKKSLTEI
KDVLTLRGLSLGMRLENWPPAGLREEETKVTA
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtatctaattttcttaagcccaggatagtggatgtccagcgtataaatgattac
gcaactaaggttactttagaaccgctagaacgcggattcgggcataccttgggcaatgct
ctgcgccgaatcttactatcttcaatgccaggctgtgccattatcgaagcgcaaattgat
ggtgtgttacatgaatataccaccaaggaaggggtgcaggaggatatgacggaaatcctg
cttaatcttaaaggagttgcagtcaagttgcatggccgtgatgaagtcaccttgaatttg
agcagtaaagggccggtaacggtgactgcgggagatattcaactggagcatgatgtagag
gttattaatcctgagcacgttattgctcatctcactaaatctggtgaacttaaccttact
atgaaggttgtccgtggccgaggttatcagtcagcttccatgcgaattcctaaggaagag
gatgaacgctctatcgggcacctaattcttgatgcttcgtttagccctatccgaagagtg
acttatgaagtagatagtgcccgcgttgagcagcgaaccgatttagataagctgattata
gagatcgaaacgaatggtactatcgccccggatgaagcagtacgaaaggctgcaaccatt
ctgcaagatcagctaacggcttttgttgagttggaaggtaaaattgaaacggctaaagag
aaaaaggcggccgagattgatcctgtgctattacagccgatagacgatctggaattgacg
gtacgttcagcaaattgtcttaaagcagaaaatatttactatattggcgatcttattcag
aaaacggaggttgagttattaaaaactcctaatttgggtaagaaatcgctaacggaaatt
aaagatgtattgacattgcgggggctatctttaggtatgcgcttagaaaattggccgccg
gcggggctacgtgaagaagaaactaaagttactgcttga
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