Nitrosococcus oceani: Noc_2843
Help
Entry
Noc_2843 CDS
T00281
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Noc_2843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noc03019
]
Noc_2843
03009 Ribosome biogenesis [BR:
noc03009
]
Noc_2843
Enzymes [BR:
noc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Noc_2843
Messenger RNA biogenesis [BR:
noc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Noc_2843
Ribosome biogenesis [BR:
noc03009
]
Prokaryotic type
rRNA processing factors
Noc_2843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABA59289
UniProt:
Q3J7A7
LinkDB
All DBs
Position
complement(3217844..3220138)
Genome browser
AA seq
764 aa
AA seq
DB search
MKRMLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDY
GADRQGFLPLKEVTRSYFQSHQGESGDRPKVQDVLKEGQELVVQVEKEERGNKGAALSTF
ISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGKNAEE
LQWDLNYLLHLWHSIQAAAEGRPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQR
AYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALT
TIDINSARANKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVE
NRLRECLREDRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLG
LSVLRLIEEGAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLET
PVFEIERIKDVGKGESRVDKRFEMQSYQMANEPSPKKPALLTPSAIPDEPLVKAGSPLFP
KPEPQPVAPKAEPDFLRRFWTAFMKGDQELDVAEVVTQETEVVSEETGERGRLPPRRGRS
QGRGRRGSGRQHNRKENTQGNEGSGVSSGAESGQAASEAKETQDMQNGTESSSAPSSRTT
TRGRRGGRRRRVNATGRYRHRSGRKEEEETKRPEEAQYPEKDSLPSSTVLTTPPAKSPLE
ETASDRKKAPSEEGREGLSQEPESPGPTKVGVEREQAAAVKEPL
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttattaatgcaactcatgcggaagagttgcgagtagctatggttgat
ggccaatacctacaagatttggatattgaaaatccggctcgggaacagaaaaaagccaat
atttataagggtaaaattacccgaatagaaccaagcttagatgccgtatttgtagattat
ggcgctgatcgccaaggatttttgccccttaaagaggtgacgcgcagctattttcagtcc
caccagggagaatctggagaccgccctaaagtccaggacgtgcttaaagaagggcaagaa
ttagtcgttcaggtagaaaaagaagagcgaggcaataagggcgcggcgctctctactttt
attagtctagctggacggtatctcgttttgatgcctaataatccaagggctggtggggtt
tcgcgccggatcgagggggaagagagaagtatgctattggaggcaatgcgtaccctcgaa
attcctgaaggtatgggtctcattacgcggactgccgccgttggtaaaaacgctgaggaa
ttacaatgggatcttaattacttactccacctttggcattctatccaggcggccgctgag
gggcggcccgcgccttttcttatctatcaggaaagcgatgtcattattcgcgcattgcgg
gattacctccgcctggatataggcgagatccttattgatactccagatgtttaccagcgg
gcctatgatttcatgcgccaagtaatgccccctgagctacgcaaacttaaactttaccaa
gataaggtttctcttttcacccgctttcaaatcgagtctcaaattgagacggcattccag
catgaggtagcactgccttctggtggcgcgattgtcgtcgattatactgaggctttgacc
accatcgatattaactcggcgcgggcaaataagggcgaggatattgaggagacggccctt
tccactaacttagaagcggctgaggagatagcacgtcaactaaggctgcgtgatttaggg
ggattgatcgttatcgattttattgatatggcgccgttgcgtaatcaacgggcggtcgaa
aatcggttacgcgagtgtttgcgcgaggatcgggcgcgagtgcaagtaggccgtatttcc
agatttgggcttttagagatgtcacggcagcgattgcgaccctccctaggagaggcccat
caagtcgtatgtccacgctgtaatggccggggccaggtccggggagtggaatctttgggg
ttatcagtcttacgtcttatcgaagaaggggcagctaaagaaaagactgcccgtatggta
attcagcttcctatttccgtagcctcctttttgctcaatgaaaaacgggctaaccttgcc
gccattgaaaagcgatacggggcacacttgtttttagttcctaattctcatctggaaacc
ccggtttttgagattgagcgtattaaagatgtagggaaaggtgagagccgagtggataaa
cggtttgagatgcaaagttaccagatggcaaatgaaccaagtcctaaaaagccggcgctt
ttaacacctagcgctatcccagatgagcccttggttaaagcaggttctcctttatttcct
aagcctgaaccgcaaccggtagccccaaaggctgagcccgattttttaaggcgcttttgg
acagcgttcatgaagggggaccaagaattagatgtggcagaagtggtgacccaagaaaca
gaagtagtttctgaagaaacgggcgaacgagggcgtttgcctccccggcgcgggcgttct
caaggtagagggcggcgcggttcaggtcggcagcacaatcgcaaggaaaatacccagggc
aatgaaggcagtggtgtttcttctggggcagagagtgggcaggcggcatcggaagcaaag
gaaactcaggatatgcagaatggcacagagagttctagcgccccatcttcaaggacgact
acccgaggccgacggggaggccggcgccgccgcgtcaatgccactggccgatatcgtcac
cgcagcggtagaaaagaagaggaagagacaaagcggccagaagaagcgcaatatcccgaa
aaggactccttaccctcttcaacggtgttaacgactcctcccgcgaaatcacctctagaa
gagacggcttctgatagaaaaaaggctccatcggaagaaggccgggaagggttgtcccag
gaaccggaatcccctggaccgaccaaggtgggtgttgagagggagcaggcggccgccgtg
aaagagccgctataa
DBGET
integrated database retrieval system
