Nocardioides sp. JQ2195: ncot_00730
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Entry
ncot_00730 CDS
T10874
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
noca Nocardioides sp. JQ2195
Pathway
noca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ncot_00730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noca03400
]
ncot_00730
Enzymes [BR:
noca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ncot_00730
DNA repair and recombination proteins [BR:
noca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ncot_00730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
AAA_22
PDDEXK_1
NAT10_TcmA_helicase
AAA_SelU
ResIII
Motif
Other DBs
NCBI-ProteinID:
QIX25272
LinkDB
All DBs
Position
147733..151167
Genome browser
AA seq
1144 aa
AA seq
DB search
MSEARGRGGPGADLFVEDLEPFDITDPLPTGTTLLEASAGTGKTWTIGALVTRFVAEGEA
RLEEMLVVTFGRAASQELRERVRAQLVEAEQALADPAAPHQENDLIELLLTGTQQEVAER
RHNLREALGSFDAATIATTHQFCQLVLRSLGVAGDTDSSARLVEDLDDLLVEVVDDLYLR
GFADAEDGPLFSRSEALSLARAAVGDPQARLEPTSAEPSSKPGRRLGFARAVRAEMDRRK
RRLGVLSYDDLLSQLAHALDEEDAPARARMRQRWKVVLVDEFQDTDPVQWQVLDRAFTGH
ARMVLIGDPKQAIYAFRGGDVVTYLAAAATADTRKTLATNWRADQPLLSSLQTVLDAAEL
GDPRIVVRPVEAAHDESRLVGAPDDAPFRLRVVRREQFNLRGAKGVPVGRIRPLVARDCA
HDIKNLLTSGATYDGRPIAPGDVAVLAHTGKSLQLVREALHEIGVPAVVAGGGSVFATPA
AVEWLTLLEALEQPHRSARVRSAALTSFLGIDAVELDADEDLTDRVASTMREWAELFSLR
GVAAVMEAAVIGGLYARVLSRVDGERHLTDLRHVAQALHQAALVDRLGLVAVLTWLRDQM
ADDKVQVASERTRRLDSDAAAVQLVTIHGSKGLEYPVVHLPFVADRFSRDPAIPLFHAPS
DEQRCIDVGSGGDDWRGNVARHKAEDLGESLRLLYVAMTRAQSQVVAWWAPSNNAKTSAL
HRMLIGRGPSMSAVPPEVPLSDDDATQAFFDAWQRHGGPTWLPAVPAQLTDAELPRPGDD
LSARTFDRSVDTAWRRTSYSALSSVDTVDPVVAGVASEPEETPREDEPDVPQVVSVAGSG
GFEPFETARTSPPQEPTLAGARSSTTGGAVVPSPMGELPVGATFGSLVHGVLETADPSAP
DFRAELLVRVREQLVRWPVELDPAGLAEALIVVCESPLGPLAGDATLRAIPMADRLCELE
FELPLSGGDEVHYPTEPVRLGDVAPLLRRHLPAGDPLLPYAEALADPNLGGQDLRGYLTG
SVDVVLRIGGTFLIVDYKTNWLGGFDEALTSADYRPEALEAAMGHSDYPLQALLYAVVLH
RYLRWRLADYDPSTHLGGVLYLYLRGMCGPDTPTYDGHPTGVFSWRPPVALVEALSDLLD
GVAP
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaagcgagaggccgcggcggcccgggagcagacctattcgtcgaggacctcgag
cccttcgacatcacggacccgctgccgaccgggaccaccctgctcgaggccagtgccggc
accggcaagacctggaccatcggcgcactggtgacccgcttcgtggccgagggggaggcc
cggctcgaggagatgctggtggtcaccttcgggcgcgccgccagccaggagctgcgtgag
cgtgtgcgcgcccagctggtcgaggccgagcaggccctggccgacccggccgcgccacac
caggagaacgacctgatcgagctcctcctcaccggcacgcagcaggaggtcgccgagcga
cggcacaacctccgcgaggcgttgggcagcttcgacgccgccaccatcgccaccacccac
cagttctgccagctggtgctgcgcagcctcggcgtcgccggtgacaccgactccagtgcc
cgcctggtcgaggacctggacgaccttctcgtggaggtggtcgacgacctctacctccgc
ggcttcgccgacgcggaggacggcccgctgttcagtcgctccgaagcgctcagcctggcc
cgggccgccgtcggcgatccccaggcccggctcgagcccacgtctgctgagccgtcgagc
aagcccggacggcgcctcggcttcgcccgtgcggtgcgtgccgagatggaccgccgcaag
cgccggctcggtgtgctcagctatgacgacctgctctcccagctcgcccacgccctcgac
gaggaggacgccccggcccgggcacggatgcggcaacgctggaaggtcgtgctggtcgac
gagttccaggacaccgacccggtgcagtggcaggtgctcgaccgggccttcaccgggcac
gcccggatggtgctgatcggcgacccgaagcaggcgatctatgccttccgtgggggcgac
gtggtcacctatctcgccgccgcggccaccgccgacacccgcaagacgctggccaccaac
tggcgcgcggaccagccgctgctcagctccctgcagacggtgctcgacgccgccgagctc
ggcgacccccgcatcgtcgtacgcccggtggaggcggcgcacgacgagtcccggctcgtg
ggcgctcccgacgacgctccgttccggttgcgtgtggtgcgccgggagcagttcaacctg
cgcggcgccaagggcgtcccggtcggacgcatccggccgctggtcgcccgggactgtgcg
cacgacatcaagaacctactgacctccggggcgacctacgacgggcgcccgatcgcgccg
ggggacgtcgcggtcctcgcccacacgggcaagagcctgcagctggtgcgcgaggcgctg
cacgagatcggcgtgccggccgtcgtggccggtggcggcagcgtcttcgccacgcctgcg
gccgtcgagtggttgaccctgctcgaggcgctggagcagccgcaccgctcggcccgggtg
cgcagcgcggcgctcacctccttcctcgggatcgacgcggtggagctcgacgccgacgag
gacctcaccgaccgtgtcgcgagcacgatgcgtgagtgggcggagctgttcagcctgcgt
ggcgtcgccgcggtgatggaggccgccgtcatcggtgggctctatgcccgcgtgctctcc
cgtgtggacggcgagcgtcacctcaccgacctgcgccacgtcgcccaggccctgcaccag
gccgcgttggtcgatcggctcggactggtcgccgtgctgacctggctgcgcgaccagatg
gccgacgacaaggtccaggtcgcctccgagcggacccgacgcctcgacagtgacgcggcg
gcagtccagctggtcaccatccacggcagcaaggggctggagtaccccgtggtgcacctg
ccgttcgtggccgacaggttctcccgcgacccggcaattcccttgttccacgcgccctct
gacgaacaacggtgcatcgacgtcggcagcggtggagacgactggcgggggaacgtcgcg
cgccacaaggcggaggacctgggcgagtccctgcggttgctctacgtcgcgatgacgcgt
gcccagtcccaggtggtggcctggtgggcaccgtccaacaacgccaagacctcggccctg
caccggatgctgatcggtcgtgggccgtcgatgtcagcggtgccgcccgaggtgccgctg
tccgacgacgacgccacgcaggccttcttcgacgcctggcagcgccacggcggaccgacg
tggctgccggccgtcccggcacagctcaccgacgccgagctcccgcggcccggcgacgac
ctgagtgcccgcacgttcgaccggtcggtggacaccgcgtggcggcgtacgtcgtactcg
gcgttgagcagtgtcgacacggtggacccggtggtggccggcgtggccagcgagcccgag
gagacgccgcgcgaggacgagcccgatgtgccgcaggtggtgtcggtcgctgggtctggt
ggtttcgagcccttcgagacggctcgtacctcgcctcctcaggaaccaacactcgctggc
gctcgctcctcaaccaccggaggtgctgtggtgccatcgccgatgggcgagctgccggtg
ggagcgacattcggctccttggtgcacggcgtcctggagaccgcggacccgtctgcgccc
gacttccgggccgagctcctcgtccgggtccgggaacagctggtccgatggccggtggag
ctggacccggccgggctggccgaggccctgatcgtggtctgcgagagcccgctgggccca
ctggccggcgacgcgacgctgcgtgcgatcccgatggccgaccggttgtgcgagctcgag
ttcgagctgccgctctccggcggcgacgaggtccactacccgacggaaccggtgcgactc
ggtgacgtggcgccgctgctgcgtcgccacctccccgcgggcgacccgctgctgccctat
gcggaggccctggccgatccgaacctcggtggacaggacctgcgcggctacctcaccggg
tcggtggacgtggtgctgcggatcggtggcaccttcctgatcgtcgactacaagaccaac
tggctcggcggcttcgacgaggcgctcacctcggccgactaccggcccgaggcgctggag
gcggcgatgggccactccgactacccgttgcaggcgctgctctacgccgtcgtgctgcac
cgctacctgcgctggcgactcgccgactacgacccctcgacccacctcggtggagtgctc
tatctctacctgcgcggcatgtgcggcccggacaccccgacctacgacgggcacccgacc
ggtgtcttctcgtggcggccgccggtggcactcgtcgaggcgctgagcgacctgttggac
ggggtggcgccatga
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