Nocardioides sp. JQ2195: ncot_07000
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Entry
ncot_07000 CDS
T10874
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
noca Nocardioides sp. JQ2195
Pathway
noca03030
DNA replication
noca03430
Mismatch repair
noca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
noca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ncot_07000 (dnaE)
03430 Mismatch repair
ncot_07000 (dnaE)
03440 Homologous recombination
ncot_07000 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noca03032
]
ncot_07000 (dnaE)
03400 DNA repair and recombination proteins [BR:
noca03400
]
ncot_07000 (dnaE)
Enzymes [BR:
noca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ncot_07000 (dnaE)
DNA replication proteins [BR:
noca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ncot_07000 (dnaE)
DNA repair and recombination proteins [BR:
noca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ncot_07000 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QIX26375
LinkDB
All DBs
Position
1455436..1458996
Genome browser
AA seq
1186 aa
AA seq
DB search
MTSDSFVHLHVHTEYSMLDGAARLGDMAERTAELGMPAIAMTDHGNVYGAYDFYRKAKAA
GVKPIIGIEAYFTPNISRFERKGVNFYDGGSDDVSARGAYTHMTLLSESTEGMHNLFRLT
TGAWRDGFFKQPRMDRELLAQHGKGIIGTTGCPSGEIQVHLRYGKYDEARKVAGDFQDIL
GKENYFLELMDHGLTIENRVRDGLLKLGKDLGIPPIATNDSHYVRREDAKSQEHLLCINS
GSTMTIPAGDGPGQRFAFSGDGYYIKSPAEMRELWEGKYQLREACDNTLLIAERCNVEFT
EGNGTFMPRFPCPPGENEDSWLVKEVETGLKFRYPNGVPDDVRKQAEFELGVITQMGFPG
YFLVVADFINWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFERFLNPDRVSM
PDFDIDFDERRRSEVIKYVTEKYGDDRVSYIITYGTIKAKQAVKDSSRILGYPFAMGDRI
TKAMPAAVMGKDVPLQDIFKPDHKRYGEGGEFRALYEGDQDVKTVVDTAIGIEGLKRQWG
VHAAGVIMSSEPLVDIIPMLKRPADGAMITQFDYPTCESLGLIKMDFLGLRNLTVLDDAV
KNIKANRGEDLVLEDLELTDPKTYELLQRGDTLGVFQLDGGPMRSLLRSMRPDTFEDISA
VGALYRPGPMGADSHNKYARRKTGREPVEPIHAELAEALEDVLGETYGLIVYQEQVMAIA
QKLAGYSLGQADILRRAMGKKKKEELDKQFIGFSGGMKERGYSMDAINTLWQILLPFSDY
AFNKAHSAAYGVVSYYTAYLKANYPAEYMAALLTSVKDDKDKMAIYLNECRRMKIQVLPP
DVNESASNFTPVGNDIRFGLTAVRNVGGNVVDGIVTARQEKGRYTDFNDFMEKVPALVCN
KRVIESLVKAGAFDDMKHKRRALVAIHETAVDQYVDIKRNEAIGQDSLFAQMDGLDGAES
SGFGISVTIPDIDDWDKMTLLSHERDMLGLYVSDHPLLGLEHVLSQSADCSIGALMLDED
RSDGSPITVSGLVTAVQRKITKRGDTWAMVTLEDLDGAIDVLFFPSSYQLASTYLTEDAI
LTVKGRLSRQKDQPEIHGQEVSMPDLNDGPSGPVVISLPATRCTAPVVEQLKEVLRTHPG
MSEVQLKLLARAGTTVMRLDDRLRVTPSGALFADLKQLLGPGCLGQ
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgactccttcgtgcacctgcacgtgcacaccgagtactccatgctggacgga
gccgcacgactcggggacatggcggagcggacggccgagctgggcatgccggcgatcgcg
atgaccgaccacggcaacgtctacggggcctacgacttctaccggaaggcgaaggcagcc
ggtgtcaagccgatcatcggcatcgaggcctacttcacgcccaacatctcccgcttcgag
cgcaagggcgtcaacttctacgacggaggctccgacgacgtctccgcacggggtgcctac
acccacatgacgctgctctcggagtccaccgagggcatgcacaacctgttccggctcacc
accggcgcctggcgtgacggcttcttcaagcaacctcgcatggaccgcgagctgctcgcc
cagcacggcaagggcatcatcggcaccaccgggtgtccctccggtgagatccaggtgcac
ctgcgctacggcaagtacgacgaggctcgcaaggtggccggcgacttccaagacatcctc
ggcaaggagaactacttcctcgagctgatggaccacggcctgaccatcgagaaccgggtc
cgcgacggcctgctcaagctgggcaaggacctcggcatcccgccgatcgcgaccaacgac
tcgcactacgtccgccgggaggacgccaagtcgcaggagcacctgctctgcatcaactcc
ggctcgacgatgaccattccggccggcgacgggcccggccagcggttcgcgttcagcggc
gacggctactacatcaagtcgccggccgagatgcgcgagctgtgggagggcaagtaccag
ctccgcgaagcctgcgacaacacgctgctgatcgcggagcggtgcaacgtcgagttcacc
gagggcaacggcaccttcatgccgcgcttcccctgtcctcccggggagaacgaggattcc
tggctggtcaaggaggtcgagaccggcctgaagttccgctacccgaacggggtgcccgac
gacgtccgcaagcaggcggagttcgagctcggcgtgatcacccagatggggttccccggc
tacttcctcgtcgtcgccgacttcatcaactgggccaaggacaacggcatccgcgtcggg
ccgggtcgcggctcgggtgccgggtcgatggtcgcctacgcgatgcgcatcaccgacctc
gacccgctccagcacggcctgatcttcgagcggttcctcaaccccgaccgtgtctcgatg
cccgacttcgacatcgacttcgacgagcgtcggcgcagcgaggtcatcaagtacgtcacc
gagaagtacggcgacgaccgggtctcctacatcatcacctacggcacgatcaaggcgaag
caggccgtcaaggactcgtcgcgcatcctcggctaccccttcgcgatgggtgaccgcatc
accaaggcgatgccggcggccgtgatgggcaaggacgtccccctccaggacatcttcaag
cccgaccacaagcgctacggcgagggaggcgagttccgggccctctacgagggcgaccag
gacgtcaagaccgttgtcgacaccgccatcggcatcgagggcctcaagcgtcagtgggga
gtccacgcggccggcgtgatcatgtccagcgagccgctggtcgacatcatcccgatgctc
aagcgccctgccgacggcgcgatgatcacccagttcgactacccgacgtgcgagtcgctg
ggcctgatcaagatggacttcctcggcctgcgcaacctcaccgtcctcgacgacgcggtg
aagaacatcaaggccaaccgcggcgaggacctggtcctcgaggacctcgagctcaccgac
ccgaagacctacgagctcctgcagcgcggtgacacgctcggcgtcttccagctcgatggt
ggcccgatgcgctccctgctgcgttcgatgcggccggacaccttcgaggacatctcggcc
gtcggcgccctctatcgccccggcccgatgggggccgactcccacaacaagtacgcacgc
cgcaagaccggacgtgagccggtggaaccgatccacgccgagctcgcggaggcactcgag
gacgtcctcggtgagacctacggcctgatcgtctatcaggagcaggtgatggcgatcgcc
cagaagctggccggctactcgctcggtcaggccgacatcctgcgtcgggcgatgggcaag
aagaagaaggaggagctcgacaagcagttcatcggcttctccggcggcatgaaggaacgc
ggctactcgatggacgcgatcaacacgctgtggcagatcctgctgccgttctccgactac
gcgttcaacaaggcgcactcggcagcctacggcgtggtgtcctactacaccgcctacctc
aaggccaactacccggccgagtacatggccgcgctcctcacgtccgtcaaggacgacaag
gacaagatggcgatctatctcaacgagtgccgtcggatgaagatccaggtcctgcctccc
gacgtcaacgagtcggcctccaacttcaccccggtcggcaacgacatccgcttcggcctg
accgcggtccgcaacgtcggcggcaatgtcgtcgacggcatcgtcacagcccgtcaggag
aagggccgctacaccgacttcaacgacttcatggagaaggtgcccgcgctggtctgcaac
aagcgggtcatcgagtcgctggtgaaggccggcgccttcgacgacatgaagcacaagcgt
cgggccctggtggcgatccacgagaccgccgtcgaccagtacgtcgacatcaagcgcaac
gaggcgatcggccaggactcgctgttcgcccagatggatggcctcgatggcgctgaatcc
tcgggattcgggatctcggtgacgatccccgacatcgacgactgggacaagatgacgctg
ctcagccacgagcgcgacatgctcggcctctatgtctcggaccacccgctgctcggcctc
gagcatgtgctctcccagagcgctgactgctcgatcggtgcgttgatgctcgacgaggac
cgctccgacggctcgcccatcacggtctccggactggtcaccgccgtgcaacgcaagatc
acgaaacggggtgacacgtgggcgatggtcaccctggaggacctcgacggtgcgatcgac
gtgctcttcttcccgagctcctaccagctggcctcgacctacctgaccgaagacgcgatc
ctgaccgtgaagggcaggctctcccggcagaaggaccagcccgagatccacgggcaggaa
gtcagcatgccggacctcaacgacggccccagcgggcccgtggtgatcagcctgccggcg
acccgctgcaccgcgccggtcgtggagcagctcaaggaagtcctgcgcacgcacccgggg
atgtccgaggtgcagctgaagctgctcgcccgcgccgggacgacagtgatgcgcctcgac
gaccggctgcgggtcaccccgagcggcgcgctcttcgccgacctcaagcagctcctggga
ccgggttgccttggccagtga
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