KEGG   Nocardioides sp. JQ2195: ncot_13860
Entry
ncot_13860        CDS       T10874                                 
Name
(GenBank) DNA topoisomerase IB
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
noca  Nocardioides sp. JQ2195
Brite
KEGG Orthology (KO) [BR:noca00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:noca03032]
    ncot_13860
   03400 DNA repair and recombination proteins [BR:noca03400]
    ncot_13860
Enzymes [BR:noca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     ncot_13860
DNA replication proteins [BR:noca03032]
 Prokaryotic type
  DNA Topoisomerases
   ncot_13860
DNA repair and recombination proteins [BR:noca03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      ncot_13860
SSDB
Motif
Pfam: Topoisom_I Top1B_N_bact
Other DBs
NCBI-ProteinID: QIX27566
UniProt: A0A6H1A3I8
LinkDB
Position
complement(2918007..2919005)
AA seq 332 aa
MTRLRRSSPTEAGWTRRRAGRGFTYLDSDGARLARTDADRARSLAIPPAWREVWICPHEN
GHLQAVGTDRAGRRQYIYHQAWQTRRDAEKFDRARALGRALPKVRDHLARDLAEPDLSAA
RACALAVRLLDVGFFRIGSDTYTDEHGSFGLTTLERSHVRLGAGAATFSFNGKSDIEREV
VVDDALCLATIQKLRRRRGGFSEFLAFKDGRRWSRLGAAQVNQYLGDVSGLEISAKDFRT
WHGTVRAAVALAGSEEAGDSKASRKRAVGAAMVEVGEFLGNTPTVARTSYVDPRVLDRFE
EGRTVTVRRSAAGSPSVADQQRIERSVLRLLA
NT seq 999 nt   +upstreamnt  +downstreamnt
gtgacgcggttgcgtcggagctccccgaccgaggcaggttggacgcggcgtcgtgcgggt
cgtggattcacctacctcgactccgacggcgcccgcctcgcgcggaccgacgctgaccgt
gctcgaagcctggccatccctccagcctggcgggaggtctggatctgtcctcacgagaac
gggcacctccaagcggtgggcacggaccgagcgggtcggcggcagtacatctaccaccag
gcatggcagacccggcgggacgccgagaagttcgatcgggcgcgggctctgggccgagcc
ctgccgaaggtcagggaccacctggcgcgcgacctggcagagccagacctgtccgcagcg
agggcctgtgcccttgccgtccgcctcctcgacgtcggcttcttcaggatcggcagcgac
acctacacggatgagcacgggagcttcgggctgaccaccttggagcggagccacgtgcgg
ctcggtgccggcgcggcgaccttctccttcaacgggaagtccgacatcgagcgcgaagtg
gtcgtcgacgacgcgctctgtctcgccacgatccagaagttgcggcgacggcgaggcggc
ttcagtgagttccttgccttcaaggacggacgtcgttggagtcggctgggtgcggcgcag
gtgaaccagtacctcggggacgtctccgggctcgagatcagcgccaaggacttccgcacc
tggcacggcaccgtccgcgctgcggtcgcgttggccgggagcgaggaagcgggggacagc
aaggcctcgcgcaagcgcgccgtcggggctgcgatggtcgaggtgggcgagttcctgggc
aacaccccgaccgttgcccgcacctcgtacgtcgacccgcgcgtcctcgaccgcttcgag
gagggccgaacggtcactgtccgcaggtcagcagcagggtcaccatcggtcgccgaccaa
caacgcatcgagagatcggtcctgcgcctgctggcatga

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