Nocardioides sp. JQ2195: ncot_13860
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Entry
ncot_13860 CDS
T10874
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
noca Nocardioides sp. JQ2195
Brite
KEGG Orthology (KO) [BR:
noca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noca03032
]
ncot_13860
03400 DNA repair and recombination proteins [BR:
noca03400
]
ncot_13860
Enzymes [BR:
noca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ncot_13860
DNA replication proteins [BR:
noca03032
]
Prokaryotic type
DNA Topoisomerases
ncot_13860
DNA repair and recombination proteins [BR:
noca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ncot_13860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QIX27566
UniProt:
A0A6H1A3I8
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Position
complement(2918007..2919005)
Genome browser
AA seq
332 aa
AA seq
DB search
MTRLRRSSPTEAGWTRRRAGRGFTYLDSDGARLARTDADRARSLAIPPAWREVWICPHEN
GHLQAVGTDRAGRRQYIYHQAWQTRRDAEKFDRARALGRALPKVRDHLARDLAEPDLSAA
RACALAVRLLDVGFFRIGSDTYTDEHGSFGLTTLERSHVRLGAGAATFSFNGKSDIEREV
VVDDALCLATIQKLRRRRGGFSEFLAFKDGRRWSRLGAAQVNQYLGDVSGLEISAKDFRT
WHGTVRAAVALAGSEEAGDSKASRKRAVGAAMVEVGEFLGNTPTVARTSYVDPRVLDRFE
EGRTVTVRRSAAGSPSVADQQRIERSVLRLLA
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcggttgcgtcggagctccccgaccgaggcaggttggacgcggcgtcgtgcgggt
cgtggattcacctacctcgactccgacggcgcccgcctcgcgcggaccgacgctgaccgt
gctcgaagcctggccatccctccagcctggcgggaggtctggatctgtcctcacgagaac
gggcacctccaagcggtgggcacggaccgagcgggtcggcggcagtacatctaccaccag
gcatggcagacccggcgggacgccgagaagttcgatcgggcgcgggctctgggccgagcc
ctgccgaaggtcagggaccacctggcgcgcgacctggcagagccagacctgtccgcagcg
agggcctgtgcccttgccgtccgcctcctcgacgtcggcttcttcaggatcggcagcgac
acctacacggatgagcacgggagcttcgggctgaccaccttggagcggagccacgtgcgg
ctcggtgccggcgcggcgaccttctccttcaacgggaagtccgacatcgagcgcgaagtg
gtcgtcgacgacgcgctctgtctcgccacgatccagaagttgcggcgacggcgaggcggc
ttcagtgagttccttgccttcaaggacggacgtcgttggagtcggctgggtgcggcgcag
gtgaaccagtacctcggggacgtctccgggctcgagatcagcgccaaggacttccgcacc
tggcacggcaccgtccgcgctgcggtcgcgttggccgggagcgaggaagcgggggacagc
aaggcctcgcgcaagcgcgccgtcggggctgcgatggtcgaggtgggcgagttcctgggc
aacaccccgaccgttgcccgcacctcgtacgtcgacccgcgcgtcctcgaccgcttcgag
gagggccgaacggtcactgtccgcaggtcagcagcagggtcaccatcggtcgccgaccaa
caacgcatcgagagatcggtcctgcgcctgctggcatga
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