Nocardioides sp. JQ2195: ncot_16030
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Entry
ncot_16030 CDS
T10874
Name
(GenBank) TM0106 family RecB-like putative nuclease
Organism
noca Nocardioides sp. JQ2195
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AAA_12
RNase_H_2
AAA_11
AAA_30
AAA_19
PDDEXK_1
UvrD_C_2
AAA_16
ResIII
Viral_helicase1
AAA_22
Helicase_RecD
SLFN-g3_helicase
AAA
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
QIX27927
UniProt:
A0A6H1A637
LinkDB
All DBs
Position
complement(3366186..3369734)
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AA seq
1182 aa
AA seq
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MFTLGDSLIWSATDLVTAARCEFALLSQVDRLLGRAPQDESPDDPLMAQIADLGKRHEAQ
ALAAFEAELGVHDAARGTGVRRFEAVPGFSSAALEDAAQLTAEALTEGADVLHQPAFFDG
EFFGYADFLRATPEGWVVVDAKLARQAQPTALLQLAAYSTAVTRAGGRVAPVVRLHLGDD
RVLDFPREELEAVFRERRARIRALLVSHQAGVDPVRWDQPGILHCGSCADCERAAVAADD
LVLVARLRMDQRRRLKSVGIHTMGDLAEAETGPSGMAGSTFAKLRAQARLQVQGAAEGET
LHEVISQQALRSLPEPSPGDLFFDFEGDPLFNEGDPDRWGLEYLWGVLTSPDHPSQPRQF
MPLWADDHTAEKDQLIAFLDDVVARLEVHPDLHIYHYAPYEVTALKRLAGVCETHESVVD
DLLRRGVFVDLYATVRESVLISESSYSIKRLEPLYLSTPRGGEVTKGDASIAEYHDYCQL
RDLGDASGAAVKRANLLDYNEIDCVSTLELRDWLRGLVEPVEDDGGTGGATGGRGGAADS
GDSDDSAGGGESESEVDEALVALTDSLRSRAGAAPRPERTHEEQGWAMLASALGYHRRER
LPEAWAHFNRLGEPVGSWRTSPDVVCFDDPPEVVDDWFKGPRKRTFTRVLTAVVDLPVGS
AVGVASGMDSMYADPMPQELCPPENGVHAAGFGVTITAVEPEGERFRITFTETLKMQMDG
HPELPLALIPGFGVNEKPLAEAIREVATEADRLGTLPAQPALDVLAKRGPRLTAGGAGGT
LPDSGDKAADLTEALLSIDRSYLAVQGPPGTGKTYTGSEVITRLVRDHGWKVGVVAQSHA
VVENFLAAVVKRGLDPTLIAKKPKPGSKAGTRPWQEKKDPAAFVEGTEGGCLVGSTAWAY
AATSFPRDGLDLLVIDEAGQFSLANTIAVSVAAQRLLLLGDPQQLPQVSQGTHGEPVNRS
ALGWLMDGHHSLPAELGYFLADSYRMHPAVCAPVSELSYDGLLHSAPPASKRSIDGFAPG
LEVVRISHQENRTSSVEEARVIVDRIRSVVGRLDWQDPEDPSTPRQLGRADVLVVAPYNA
QRQLITQMLADAGLGDVKVGTVDKFQGQEAPVVFVSMTASSAADVPRGMDFLLLRNRINV
AISRAQWRAVLVRSTALTSYLPGSTRGLVELGAFVRLCESGT
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttgttcacgctcggcgattcactcatctggagtgccacggacctcgtcaccgcggcgcgc
tgcgagttcgccctgctctcccaggtggatcgcctgctcggtcgggcaccgcaggacgag
tcgcccgatgatccgctgatggcccagatcgccgacctcggcaagcgccacgaggcccag
gccctggccgccttcgaggccgagctcggtgtccacgacgccgcgcggggcaccggcgta
cgccgcttcgaggcggtgcccggcttctcgtcggccgcgctcgaggacgcggcccagctg
accgccgaggcgttgaccgagggcgccgacgtgctccaccagccggcgttcttcgacggc
gagttcttcgggtacgccgacttcctgcgcgcgacgcccgagggctgggtggtcgtcgac
gccaagctggcccgccaggcccagcccacggcgttgctgcagctggccgcctactcgacc
gcggtcacccgggccggtggccgggtcgcgccggtcgtgcgcctccacctgggcgacgac
cgggtgctcgacttcccccgcgaggagctcgaggcggtcttccgcgaacgccgcgcgcgg
atccgtgccctgctcgtctcccaccaggccggtgtcgatccggtccggtgggaccagccc
ggcatcctccactgcggcagctgcgccgactgcgagcgcgcggccgtggccgccgacgac
ctggtcctggtcgcccggctgcggatggaccagcgtcgcaggctcaagtccgtcggcatc
cacaccatgggcgacctcgccgaggccgagaccggcccgagtgggatggccgggtccacc
ttcgcgaagctgcgcgcgcaggcgcggctccaggtgcagggtgcggccgagggagagacc
ctccacgaggtcatctcccagcaggccctgcgcagcctgccggagccgtctcccggtgac
ctgttcttcgacttcgagggtgacccgctcttcaacgagggcgaccccgaccggtggggt
ctcgaatacctctggggcgtcctgacctcacccgaccacccgagccagccgcggcagttc
atgccgctgtgggccgacgaccacaccgcagagaaggaccagctgatcgcgttcctcgac
gacgtcgtggcgcgcctcgaggtgcatcccgacctgcacatctatcactacgcgccctac
gaggtgaccgcgctgaagcggctggccggtgtgtgtgagacccacgagtcggtggtcgac
gacctgctccggcgcggggtgttcgtcgacctctatgccacggttcgcgagtcggtgctg
atctcggagtcgtcctacagcatcaagaggctggagccgctctacctctcgacccctcgc
ggtggcgaggtgacgaagggcgacgcctcgatcgcggagtaccacgactactgccagctc
cgggacctcggcgatgcctcgggcgctgcggtgaagcgagcgaacctgctcgactacaac
gagatcgactgtgtctccaccctcgagctgcgtgactggctccgcggtctggtggagcct
gtcgaggacgacggcggcaccggcggcgccaccggcggtcgtggcggtgcggccgactcc
ggcgactccgacgactccgctgggggaggcgagagcgagagcgaggtcgacgaggccctc
gtcgcactgaccgactccctgcgctcgcgcgccggcgccgccccgcgtcccgagcgcacg
cacgaggagcaggggtgggcgatgctcgcctccgccctcggctaccaccggcgcgaacgc
cttcccgaggcgtgggcccacttcaaccggctcggtgagccggtcggttcctggcgcacc
tcgcccgacgtggtctgcttcgacgacccgccggaggtggtcgacgactggttcaaggga
ccccgcaagaggaccttcacccgggtgctgactgccgtggtggacctcccggtcggcagc
gctgtcggggtggcctcggggatggacagcatgtacgccgatccgatgccccaagagctg
tgcccgcccgagaacggagtgcacgctgccggcttcggcgtgacgatcaccgccgtggag
cccgagggggagcgcttccggatcaccttcaccgagaccctcaagatgcagatggacggc
cacccggagctgccgctcgccctgatccccggcttcggggtgaacgagaagcccttggcc
gaggcgatccgggaggtcgccaccgaggccgaccggttgggcacccttcccgcccagccg
gccctcgacgtgctcgccaagcgcgggccccgactgaccgccggaggcgccggcggcaca
cttcctgactcgggtgacaaggcggccgacctgaccgaggcgttgctgtcgatcgacagg
tcctacctggccgtgcagggcccacccggcaccgggaaaacctacaccgggtccgaggtg
atcacgcggttggtgcgcgaccacggctggaaggtcggcgtcgtcgcccagtcccacgcg
gtggtggagaacttcctcgccgccgtggtcaagcgcgggctcgacccgacgctgatcgcc
aagaagcccaagcccggatccaaggccggaaccaggccgtggcaggagaagaaggacccg
gctgccttcgtggagggcaccgagggagggtgtctcgtcggcagcacagcgtgggcctac
gcggcgacctccttcccgcgcgacgggctcgacctgctggtcatcgacgaggcggggcag
ttctcactggccaacacgatcgcggtctcggtggctgcccagcggttgctcctgctcggc
gacccgcaacagctgccgcaggtcagccagggcacccatggcgagcccgtcaacaggtcc
gccctgggctggctgatggacggtcaccactccctgcccgccgagctcggctacttcctc
gcggacagctatcggatgcacccggcggtctgcgcccccgtgtcggagctgtcctacgac
gggctgctgcactcggccccaccggcgagcaagaggtcgatcgacggtttcgcgccgggg
ctcgaggtcgtgaggatctcccaccaggaaaaccgcacgtcgagcgtcgaagaagcccgg
gtgatcgtcgaccggatccgctccgtcgtcggtcgcctcgactggcaggatcccgaggac
ccctcgacccccaggcagctgggccgggccgacgtgctggtcgtggcgccgtacaacgcc
cagcgtcagctgatcacccagatgctggccgacgccgggctcggcgacgtcaaggtcggt
accgtcgacaagttccagggccaggaggcccccgtggtgttcgtgtcgatgaccgcgtcg
tcggcggccgacgtgccccggggcatggacttcctgctgttgcgcaaccgcatcaacgtg
gccatctcgcgtgcccagtggcgtgcggtgctggtccggtcgacggcgttgacgtcctac
ctcccgggcagcacccgggggctggtggagctgggggccttcgtgaggctgtgcgagtcc
ggcacctga
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