Nocardioides sp. JQ2195: ncot_16720
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Entry
ncot_16720 CDS
T10874
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
noca Nocardioides sp. JQ2195
Pathway
noca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
noca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ncot_16720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noca03021
]
ncot_16720 (rpoB)
03400 DNA repair and recombination proteins [BR:
noca03400
]
ncot_16720 (rpoB)
Enzymes [BR:
noca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ncot_16720 (rpoB)
Transcription machinery [BR:
noca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ncot_16720 (rpoB)
DNA repair and recombination proteins [BR:
noca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ncot_16720 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QIX28051
LinkDB
All DBs
Position
complement(3523201..3526749)
Genome browser
AA seq
1182 aa
AA seq
DB search
MAARSNAASNNHRRTSFAKISEPLEVPQLLALQTDSFDWLVGNEKWQQVVQARIDAGEDV
STKSGLTEIFEEISPIEDFSETMSLSFENPEFVDPKYTVDECKEKDFTYSAPLYVSAEFT
NNETGEIKGQTVFMGEFPLMTDKGTFVINGTERVVVSQLVRSPGVYFERAADKTSDKDIF
TSKVIPSRGAWLEFEVDKRDLVGVRLDRKRKQNVTVLLKALVAVAEDTGEDYDYQAVMAE
LSQYESIQLTLEKDNTEGPDDALLDIYRKLRPGEPPTREAALTLLKNYYFNPKRYDLAKV
GRYKINKKLGQAEAFDKQTLTISDIVATIRYIVRLHNGDDKLTDGEGNVLIDSDGKEIEV
RPDDIDHFGNRRMRTVGELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVVA
ALKEFFGTSQLSQFMDQTNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHTSHYGRMCP
IETPEGPNIGLIGSLASYGRINPFGFVETPYRRVEKGVVTDKVDYLTADDEDKFVIAQAN
AKLDDNMRFAEERVLVRQRDGEVTEILADEVDYMDVSPRQMVSVATALIPFLEHDDANRA
LMGANMQRQAVPLVKSDSPIVGTGMELRAAVDAGDVVTAEKGGVVKEVSADLIEVMNDDG
TYSTYRMAKFRRSNQGTCINQRPLVSEGDRVEGRDALTGRAGTPIADGPCTDDAEMALGT
NLLVAFMPWQGHNYEDAIILSQRLVQEDVLTSIHIEEHEVDARDTKLGPEEITRDIPNVS
DEMLADLDERGIIRIGAEVTNGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSM
KVPHGESGTVIGVRVFDREDGDELPPGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAK
ILPIEDMPFMEDGTPVDVILNPLGVPRRMNIGQILELHLGWLAKQGWDLNLHDDPESADW
KQRLIKIHADKAEPNTKVATPVFDGAREDEITGLLGSTLPTRDGVRMIGENGKADLFDGR
SGEPFPDPVSVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVW
AMEAYGAAYALQELLTIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLN
VEVLSQDGSSIELRDAEEDVFRAAEELGIDLSRREPSSVEEV
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcgcgcagcaacgcagcaagcaacaaccaccgtcgcacttccttcgcaaagatc
agcgaacccctcgaggttccacaactcctggctctccagaccgacagcttcgactggctc
gtcggcaacgagaagtggcagcaggtcgtccaggcccgcatcgatgccggcgaggacgtc
tcgacgaagtccggtctgacggagatcttcgaggagatctcaccgatcgaggacttctcc
gagacgatgtcgctctcgttcgagaaccctgagttcgtcgatccgaagtacaccgtcgac
gagtgcaaggagaaggacttcacctactccgcacctctctacgtctccgccgagttcacc
aacaacgagaccggcgagatcaagggccagacggtcttcatgggcgagttcccgttgatg
accgacaagggcaccttcgtgatcaacggcaccgagcgtgtcgtcgtctcgcagctggtg
cgttcccccggcgtctacttcgagcgggccgcggacaagacgtccgacaaggacatcttc
acctccaaggtcatcccgtcgcgtggtgcctggctcgagttcgaggtcgacaagcgcgac
ctggtcggcgtacgcctcgaccgcaagcgcaagcagaacgtcaccgtcctgctgaaggcc
ctcgtggccgtcgccgaggacaccggcgaggactacgactaccaggccgtgatggccgag
ctcagccagtacgagtcgatccagctgacgctcgagaaggacaacaccgagggtcctgac
gacgcactgctcgacatctaccgcaagctgcgtccgggcgaaccgcccacgcgcgaggcc
gcgctgacgctgttgaagaactactacttcaacccgaagcgctacgacttggccaaggtc
ggccgctacaagatcaacaagaagctcggccaggccgaggccttcgacaagcagacgctg
accatctccgacatcgtcgccacgatccgctacatcgtccgcctgcacaacggcgacgac
aagctgaccgacggtgagggcaacgtcctcatcgactccgacggcaaggagatcgaggtc
cgtcccgacgacatcgatcacttcggcaaccgccgcatgcgcaccgtcggcgagctgatc
cagaaccagctccgcaccggtctggcccggatggagcgcgtggtccgcgagcggatgacg
acccaggacgtcgaggccatcacgccgcagtccctgatcaacatccgcccggtcgtcgcc
gcgctgaaggagttcttcgggacctcccagctctcgcagttcatggaccagaccaacccg
atcgccggtctgacccacaagcgccgcctctccgcgctcggcccgggtggtctctcccgt
gaccgtgccggcatggaggtccgcgacgtccacacctcgcactacggccggatgtgcccg
atcgagacccccgagggtcccaacatcggtctgatcggctcgctggcctcctacggccgg
atcaacccgttcgggttcgtcgagacgccctaccgccgcgtcgagaagggtgtcgtcacc
gacaaggtcgactacctgaccgccgacgacgaggacaagttcgtcatcgcgcaggccaac
gccaagctcgacgacaacatgcgcttcgccgaggagcgggtgctggtccgccagcgcgac
ggtgaggtcaccgagatcctggccgacgaggtcgactacatggacgtctcgccgcgccag
atggtgtcggtcgcgacggccctgatcccgttcctcgagcacgacgacgccaaccgtgcc
ctcatgggtgccaacatgcagcgtcaggccgtgccgctcgtcaagagcgactcgcccatc
gtcggcaccggcatggagctccgtgccgccgtcgacgccggcgacgtggtcaccgccgag
aagggcggcgtggtcaaggaggtgtcggccgacctgatcgaggtcatgaacgacgacggc
acctactcgacgtaccgcatggcgaagttccgtcgctccaaccagggcacctgcatcaac
cagcgtccgctggtctccgagggtgaccgggtcgagggtcgcgacgcgctgaccggccgg
gccggcacgcccatcgccgacggtccgtgcaccgacgacgccgagatggcgctgggcacc
aacctgctggtcgccttcatgccgtggcagggccacaactacgaggacgcgatcatcctc
agccagcgcctggtccaggaagacgtcctcacctcgatccacatcgaggagcacgaggtc
gacgcccgcgacaccaagctcggcccggaggagatcacccgcgacatccccaacgtctcc
gacgagatgttggccgacctcgacgagcgcggcatcatccgcatcggcgccgaggtcacc
aacggtgacatcctcgtcggcaaggtgacccccaagggtgagaccgagctgaccccggag
gagcgcctcctgcgcgccatcttcggtgagaaggcccgcgaggtgcgcgacacctcgatg
aaggtcccgcacggtgagtccggaaccgtcatcggcgtgcgcgttttcgaccgcgaggac
ggcgacgagctgcccccgggtgtcaaccagctggtgcgtgtctacgttgcccagaagcgc
aagatctcggtgggcgacaagctcgccggtcgtcacggcaacaagggcgtcatcgccaag
atcctgccgatcgaggacatgccgttcatggaggacggcaccccggtcgacgtgatcctg
aacccgctgggtgtcccgcgacggatgaacatcggccagatcctcgagctccacctcggc
tggctcgccaagcagggttgggacctcaacctgcacgacgacccggagagcgcggactgg
aagcagcgcctcatcaagatccacgccgacaaggccgagccgaacaccaaggtcgccacc
ccggtgttcgacggtgcgcgcgaggacgagatcaccggtctgctgggctcgaccctgccg
acccgtgacggcgtgcggatgatcggcgagaacggaaaggccgacctgttcgacggccgc
tccggcgagccgttcccggacccggtctcggtgggctacatgtacatcctcaagctgcac
cacctggtcgacgacaagatccacgcacgcagcaccggcccctactcgatgatcacgcag
cagcccctgggtggtaaggcccagttcggtggccagcggttcggcgagatggaggtctgg
gcgatggaggcgtacggcgccgcctacgccctgcaggagctgctgacgatcaagtccgac
gacgtgcctggtcgcgtcaaggtctacgaggccatcgtcaagggcgagaacatccccgac
tccggcattcccgagtcgttcaaggttctcgtcaaggagatgcagtcgctctgcctgaac
gtggaggtcctctcgcaggacggctcctcgatcgagctccgcgacgccgaggaagacgtc
ttccgggccgctgaagagctgggcatcgacctgtcgcgtcgcgagcccagctccgtcgaa
gaagtctga
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