Nocardiopsis sp. LDBS0036: UIS43_00775
Help
Entry
UIS43_00775 CDS
T11195
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nocb Nocardiopsis sp. LDBS0036
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nocb03016
]
UIS43_00775
Enzymes [BR:
nocb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UIS43_00775
Transfer RNA biogenesis [BR:
nocb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UIS43_00775
Prokaryotic type
tRNA splicing ligases
UIS43_00775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XEA86084
LinkDB
All DBs
Position
215168..216355
Genome browser
AA seq
395 aa
AA seq
DB search
MPYTEVSGERVPIRMWAAPDEVEAAAMEQLRNVTRVPWVHGLAVMPDVHYGKGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVRTDLTAERLPDDLRRLRSALEAVIPVGYHAHDEPVDPA
AVPTLREADWSGFWAGFDALADAVRPRRERALRQMGTLGGGNHFLEVCLDDGGAVWLVLH
SGSRNIGKELASHHIERAQALPHNQDLPDRDLAVFVTGTPEMDAYRRDLFWAQEYARRNR
DVMMGLACRTLAEQVPGTRFEQWISCHHNYVAEETYDGVDVLVTRKGAIRAGKGDLGIIP
GSMATGTYIVRGLGNPASFNSASHGAGRRMSRNKARRTFTEADLVEQTRGVECRKDRGVV
DEIPAAYKDLESVIEAQADLVEVVAHLRQVVCVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccctacaccgaggtttccggggaacgcgtccccatccgcatgtgggccgcgcccgac
gaggtcgaggccgcggccatggagcagctgcgcaacgtcacccgcgtgccgtgggtgcac
ggactggccgtcatgcccgacgtgcactacggcaagggcgccaccgtcggatcggtcatc
gccatgcgcgacgcggtcagccccgccgccgtcggcgtggacatcggctgcggcatgacc
gccgtgcgcaccgacctgaccgccgagcgcctgcccgacgacctccggcggctgcgctcc
gccctggaggccgtgatcccggtcggctaccacgcccacgacgaaccggtcgaccccgcc
gccgtccccaccctgcgcgaggccgactggtccggcttctgggcggggttcgacgccctg
gccgacgccgtgcgcccccgccgcgagcgcgccctgcgccagatgggcaccctcggcggc
ggcaaccacttcctggaggtgtgcctggacgacggcggcgccgtgtggctggtgctgcac
tccgggtcgcgcaacatcggcaaggagctggcctcccaccacatcgagcgggcccaggcg
ctgccgcacaaccaggacctgcccgaccgcgacctggcggtgttcgtcaccggcacgccc
gagatggacgcctaccgccgggacctgttctgggcccaggagtacgcgcggcgcaaccgc
gacgtcatgatgggcctggcctgccgcaccctggccgagcaggtcccgggcacccgcttc
gagcagtggatctcatgccaccacaactacgtggccgaggagacctacgacggggtggac
gtgctcgtcacccgcaagggcgccatccgcgccggtaagggcgacctcgggatcatcccg
gggtccatggcgacgggcacctacatcgtgcgcggactgggcaacccggcctcgttcaac
tccgcctcgcacggggcgggacggcggatgagccggaacaaggcccgtaggaccttcacc
gaagccgacctggtcgagcagaccaggggagtggagtgccgcaaggaccggggcgtcgtg
gacgagatccccgccgcctacaaggacctggagtcggtgatcgaggcccaggccgacctg
gtcgaggtggtcgcccacctgcgccaggtggtgtgcgtcaagggctga
DBGET
integrated database retrieval system
