Nocardiopsis sp. LDBS0036: UIS43_09350
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Entry
UIS43_09350 CDS
T11195
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb03030
DNA replication
nocb03430
Mismatch repair
nocb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UIS43_09350
03430 Mismatch repair
UIS43_09350
03440 Homologous recombination
UIS43_09350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocb03032
]
UIS43_09350
03400 DNA repair and recombination proteins [BR:
nocb03400
]
UIS43_09350
Enzymes [BR:
nocb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UIS43_09350
DNA replication proteins [BR:
nocb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UIS43_09350
DNA repair and recombination proteins [BR:
nocb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UIS43_09350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
RNase_H_2
DUF7508
DEDDh_C
UVR
Motif
Other DBs
NCBI-ProteinID:
XEA87692
LinkDB
All DBs
Position
complement(2239145..2240932)
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AA seq
595 aa
AA seq
DB search
MVRQAAPAGVQTSISDLGTPLAAASFVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEF
ATLVNPGTPIPANITLLTGITQSMVASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTG
FLKAACERHGTDWPGYPVVDTLRLARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDA
RATVGVLHGLVERLRPMGVSSVEELRAVTKPPTKAQRSRRHLAEDLPEEPGVYVFTDARG
ESLYVGKSKNLRRRVRTYFTAAESRQRIREMAGLVAGVTPIVCSSELEASVRELRIIAER
KPPYNRRSRNPERASWVRLTADAFPRLSVVRAVSGDGAAHIGPYASPREAERAREALLHV
FPLRQCAHTFRPPKAVAGGSGGGTRVAPQVVTSGARWTGPCVVAQLGRCGAPCDGSESEA
EYAVHAEAARVAMTGDPAAVVDAHTARIGELAADLRYEEAAHLRDRLTAFLRGARRAQRL
SAIAAVAHLVASRRTAAGWETCVVRHGRLAASAVLRPGTDPAAFLASLVATAEYVPAGYG
PSPGALPGETELVLDWLADPATRLVEIDGEWTCPLRSAEAHTGMTHWAHGRASAQ
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtggtacgacaagcggcgcccgccggcgtccagaccagcatcagcgacctcggtacgccg
ttggccgcggcgtccttcgtggtgctggacctggagaccaccggcaccagcgcgagcggc
tcccggatcacggaggtcggcgcggtcagggtgcgcggcggcgaggtcgtcggcgagttc
gccaccctggtcaatcccggtacccccataccggccaacatcaccctcctgacggggatc
acccagtcgatggtggcctcggccccgccgatggaggaggtcctgccccggctgctggcc
ttcctggacgccgagcccgacaccgtgctcgtggcccacaacgcgcccttcgacaccggc
ttcctcaaggccgcgtgcgagcgccacggcacggactggcccggctacccggtcgtggac
acgctgcgcctggcccgcgccgtgctcgcgcgcggcgagacgcgcaaccaccggctggcc
acactggcggcctacttcggggtcccggtcgcgcccaaccaccgcgccctggaggacgcc
cgcgccaccgtgggcgtcctgcacgggctcgtggagcgcctgcgccccatgggcgtgtcc
agcgtggaggagctgcgcgcggtcaccaagccgcccaccaaggcccagcgcagcaggcgc
cacctggccgaggacctgccggaggagccgggcgtgtacgtgttcaccgacgcccgcggg
gagagcctctacgtcggcaagagcaagaacctgcgccgccgggtgcgcacctacttcacc
gcggccgagagccgccagcgcatccgtgagatggcgggcctggtggcgggcgtgaccccc
atcgtgtgctccagcgagctggaggcctccgtccgcgagctgcgcatcatcgccgaacgc
aaaccgccctacaaccggcgttcgcgcaaccccgagcgcgcctcgtgggtccggctcacc
gccgacgccttcccgcgcctgtcggtggtgcgcgcggtcagcggcgacggggcggcccac
atcgggccctacgcctcgcctcgcgaggccgagcgggccagggaggccctgctccacgtc
ttcccgctgcgccagtgcgcgcacaccttccggcccccgaaggcggtcgcggggggaagc
ggaggcgggacccgcgtcgccccgcaggtggtcacctcgggcgcgcggtggacgggcccg
tgcgtggtggcacagctgggccgctgcggcgcgccctgcgacggcagcgagagcgaggcc
gagtacgccgtgcacgccgaggccgcgcgcgtcgcgatgaccggggaccccgccgccgtg
gtggacgcgcacaccgcgcgcataggcgaactcgccgcggacctgcgctacgaggaggcc
gcgcacctgcgcgaccggctcaccgcgttcctgcgcggcgccaggcgggcccagcgcctg
tcggccatcgccgcggtcgcgcacctggtcgcctcccgccgcaccgccgcgggctgggag
acctgcgtggtccgccacggccgcctggccgccagcgccgtgctgcgcccgggcaccgac
ccggccgcgttcctggcctccctcgtggccaccgccgagtacgtgcccgccgggtacggg
cccagccccggcgcgctcccgggggagaccgagctggtcctggactggctcgccgacccc
gccacgcggctggtcgagatcgacggggagtggacatgcccgttgcgcagcgccgaggcg
cacaccgggatgacacactgggcccatggccgcgcttccgctcaatga
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