Nocardiopsis sp. LDBS0036: UIS43_10565
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Entry
UIS43_10565 CDS
T11195
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UIS43_10565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocb03019
]
UIS43_10565
03009 Ribosome biogenesis [BR:
nocb03009
]
UIS43_10565
Enzymes [BR:
nocb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UIS43_10565
Messenger RNA biogenesis [BR:
nocb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UIS43_10565
Ribosome biogenesis [BR:
nocb03009
]
Prokaryotic type
rRNA processing factors
UIS43_10565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
XEA87907
LinkDB
All DBs
Position
complement(2514494..2517517)
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AA seq
1007 aa
AA seq
DB search
MLDNEPNNGADGTAGTTETTNNTAAAPSTGGGEVRVTTPAPAKGVRRAAGPPPEPDDVFT
PPSAPVTSLAGSGEGGTVKTSVATTSRRRTVRAAGRPDEDAAPRRSRASADDEGTAPRRA
RASADEEAAPRRSRASSASEDTAPSTARSRGRSRARSAPAAETAGPAPSEAADEPAKDEE
TVEAGGGNVFQAPSLLFQPPVASAAPVPARSTAPAEAEEESEEAEEETAQAAVAEETGDG
DDDRPSRRRRRRGGRGRGRSRADEDESAEAPESAEDKAEQHGDRDRGEDDGAADESAESD
DRSSRRRRRRRRRSGGGEGPEATPDDPPNTVVRVREPRQEKPIEDEVQAVRGSTRLEAKK
QRRREGREQGRRRAPIVTESEFLARRESVKRDLVVRRVEDRTQIAVLEDDILVEHYVDRA
THRSYVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDSFGLDGQPKRIESVLK
SGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDKERARLKQILK
KVMPSGAGVIVRTAAEGASEEELERDITRLAKQWDSIKRKSKSANAPSLLNSEPDLTVRV
VRDVFNEDFSSLVVSGEEAWTTVREYVDYVAPNLSERLSHWNEDRDVFAAYRVDEQINKA
LERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLR
DIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLL
EAFSHSCEHCNGRGLVVASDPVESKGGGSGNGRKKKKGKGEPDQAAEKPEKAQKPSSEKA
DGADGPEKAEKAGADSDESAEADAARTEEAPEAPQTAEAPASEPAKKTRKRASRSRKAEA
AAEEQEEITATEEAPEAAQPEQAAEAPEEAPAKKTRARRTTRRTARGAADTGEAEAAGGE
SAPAEADATAAETPAEAGDDEAAERPKRRRTRRTRAAATPPTAVDAG
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagcccaacaacggtgccgacggcaccgcgggtacaactgaaacaacc
aacaacacggcggcggcgccctccacggggggcggtgaggtgcgcgtgaccacgcccgcg
cccgccaagggcgtccgccgcgccgccggaccaccccccgaacccgacgacgtcttcacc
cccccctccgcgcccgtcacctccctcgccggttccggcgaggggggcacggtcaagacc
tcggtggccaccacctcgcgcaggcgcaccgtgcgcgccgcgggccgtcccgacgaggac
gccgccccgcgccgttcgcgcgcctccgctgacgacgagggcaccgctccgcgccgggcc
cgtgcctccgctgacgaggaggccgctccgcgccgttcgcgcgcctcctccgcctcggag
gacaccgccccctccacggccaggagccgcggccgttcgcgcgcccgctccgccccggcc
gcggagaccgccgggcccgcgccctccgaggcggccgacgagcccgccaaggacgaggag
accgtggaggcgggcggcggcaacgtcttccaggccccctccctgctcttccagcccccg
gtggccagcgccgcccccgtgcccgcacgcagcaccgccccggcggaggccgaggaggag
tccgaggaggccgaggaggagaccgcccaggccgccgtcgcggaggagaccggcgacggg
gacgacgaccgccccagccgccgtcgccgccgtcgcggaggccggggacgcggccgctcc
cgcgcggacgaggacgagtccgccgaggcccccgagtccgccgaggacaaggcggagcag
cacggcgacagggaccggggcgaggacgacggcgcggccgacgagtccgccgagtccgac
gaccgcagcagccgccgtcggcgccgccgtcgccgccgctccggcgggggagagggcccc
gaggccaccccggacgacccgcccaacaccgtggtccgggtgcgcgagccccgccaggag
aagccgatcgaggacgaggtccaggcggtccgcggctccacccggctggaggccaagaag
cagcgccgccgcgagggccgtgagcagggccgccgccgcgcccccatcgtcaccgagtcg
gagttcctggcgcggcgggagtcggtcaagcgggacctggtggtgcgccgcgtcgaggac
cgcacccagatcgccgtcctcgaggacgacatcctcgtcgagcactacgtcgaccgggcc
acgcaccgctcctacgtgggcaacgtgtacctgggccgggtgcagaacgtgctgccctcg
atggaggccgcgttcgtcgacatcggcaagggccgcaacgccgtcctgtacgcgggcgag
gtcaactgggactccttcggcctggacggccagcccaagcgcatcgagtcggtgctcaag
tccggccagtcggtcctggtgcaggtcaccaaggaccccgtcggccacaagggcgcccgc
ctgaccagccagatcagcctgcccggccgctacctcgtgtacgtgcccggcggttcgatg
actggcatcagccgcaagctccccgacaaggagcgcgcgcgcctcaagcagatcctcaag
aaggtcatgccctccggcgcgggcgtcatcgtgcgcacggccgccgagggggccagcgag
gaggagctggagcgcgacatcacccgtctcgccaagcagtgggactccatcaagcgcaag
tccaagtcggccaacgccccctcgctgctcaacagcgagcccgacctgacggtgcgggtc
gtgcgcgacgtgttcaacgaggacttctccagcctcgtcgtgtccggtgaggaggcctgg
accaccgtccgcgagtacgtggactacgtggcccccaacctctccgagcgcctctcgcac
tggaacgaggaccgcgacgtcttcgccgcctaccgcgtcgacgagcagatcaacaaggcc
ctggagcgcaaggtctggctgcccagcggcggatcgctggtcatcgaccgcaccgaggcc
atgaccgtggtcgacgtcaacaccggcaagttcaccggtcagggcggcaacctggaggag
acggtcaccaagaacaacctggaggcggccgaggagatcgtccgccagctccggttgcgc
gacatcggcggcatcatcgtcatcgacttcatcgacatggtcctggagtccaaccgcgac
ctggtgctgcggcgcatgctggagtgcctctcgcgcgaccgcaccaagcaccaggtggcc
gaggtgacctcgctggggctggtccagatgacccgcaagcgggtcggccagggcctgctg
gaggccttctcgcacagctgcgagcactgcaacggccgcggcctggtggtcgccagcgac
ccggtcgagagcaagggcggcggcagcggcaacggccgcaagaagaagaagggcaagggc
gagcccgaccaggcggccgagaagccggagaaggcccagaagccgtcctccgagaaggcc
gacggggccgacgggccggagaaggccgagaaggcgggcgctgactccgacgagtccgcc
gaggcggacgcggcgcggaccgaggaggcacccgaggccccgcagacggccgaggccccg
gcctccgagcccgccaagaagacccgtaagcgggcctcccgctcccgcaaggccgaggcc
gccgcggaggagcaggaggagatcaccgccacggaggaggctcctgaggccgcgcagccc
gagcaggccgcggaagcccccgaggaggccccggccaagaagacccgcgcccggcgcacc
acccgtcgtaccgcccgcggggcggccgacaccggtgaggccgaggccgcgggcggtgag
agcgcccccgccgaggcggacgcgaccgccgccgagacgcccgccgaggccggtgacgac
gaggccgccgagcggcccaagcgtcgccgcacccggcgcaccagggcggcggccaccccg
ccgaccgccgtggacgcgggctga
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