Nocardiopsis sp. LDBS0036: UIS43_14385
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Entry
UIS43_14385 CDS
T11195
Name
(GenBank) RHS repeat-associated core domain-containing protein
Organism
nocb Nocardiopsis sp. LDBS0036
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
LolB
MHC_II_alpha
DUF7662
Motif
Other DBs
NCBI-ProteinID:
XEA83464
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Position
complement(3421565..3424726)
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AA seq
1053 aa
AA seq
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MRKHIPWSLTAATAASTLVLGLLSAPPALADTDPHSPADRTVPVPDTWEPGEANTEPVGG
EPPDEPWAPPGAESAPEAQNRSEGPETRVGTCADGVNRGIQSWYPLERHQISDRMELAVN
TQGGNLVVRHRDLTVAGTGLDLSVSSFYNSAPSYDGWTLSHGQDVGLSIFSNSIIFQGPS
GYCERFDIAEDGSFTPPAGLNAELEELSNGHYALTFHRGEYADQVWTFNANGWLYSQADR
NGHTHRMRYDTEGDLASIVDTQDRVTTFEWDPDAWEQPTRITDPVGETATAFTWNGDGGM
VALTDRAGQGIEFGYDGDGLLTSITDATGAVWEIAYNADDQVSSLTVPDGTEDGATTAYS
YADGAWSNTQTTVTDPGGGESTLEFDDQGRQTSATDQVGNTRSQTWTANSDVATTTDALQ
ASVTYDYDEFNNLIGTELPTGAATSVGFADTANPAKPTSVTTPDGDTLQMSYDDAGNLTS
AVQEEMDIEVADIRYHSNGLVNQVIDANGNSTSYSYDRAGNMTAMDEPGPMGTTQYGYDA
LSRVTSVTDGNGVRLEYGYDRLDRIVSISQGGDLLQAIAYDGNGRQITTHTDQASVEHSY
NGRGDLLETVRTDSAGSETTTYAYDAAGNVTEMVEHGKTTSYGYDAAFRLTSLTDHTGAE
TTFTNDENNRRTSITHPDGAVEERTYDDSGRLTGITTTGAADQALVQAVYSYDNDGADSD
QLQSRTVNGETETFTYDGLDRLTSDGTTDYTYDDVGNLLSAGGEEFAYNDADQVTSARGA
EVGHDEAGNMTSRGEYVYEYSVTNQTLRSNDGEGQLTSWLSYDTTDQTQMRGVTDVHEGT
RVERQLSNTALGVTNIASEGERTSFVRDPDGRLVSMVAWDGDERFHYTLDQQNTVLALTA
EGSEAESPDVVYDYSPYGERTSESLEGTEAAALSPFGFTGAYQFQDGTVHLNHRFHSTFT
LGFTQPDPSRQELNNYAYAQCDPINNTDPTGLNSCNEAINGFILGLIVTGLSFPFAATPM
GFVAAIGSGLIVISQVQAIDRACGGRISASMTT
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaagcacatcccctggtccctgacggccgcgacggccgcctccaccctcgtgctg
gggctgctgtccgcgcccccggccctggccgacaccgacccccactcacccgccgaccgc
accgttccggtccccgacacctgggagccgggcgaggccaacaccgaacccgtgggcgga
gaaccacccgacgaaccctgggctccgccgggggccgagagcgcacccgaggcccagaac
cgttcggaaggacccgaaacccgggtcggcacctgcgcggacggcgtcaaccgcggtatc
cagtcctggtacccgctggaacgccaccagatcagcgaccgcatggaactggcggtcaac
acccagggcggcaacctcgtcgtgcgccaccgggacctgaccgtggccggaacggggctg
gacctgtcggtgtccagcttctacaactccgcgccctcctacgacggctggaccctctcc
cacggccaggacgtgggactgagcatcttcagcaacagcatcatcttccagggcccctcc
ggctactgcgaacgcttcgacatcgccgaggacggctccttcaccccgcctgcggggctc
aacgccgaactggaggagctgtcgaatggccactacgcgctgaccttccaccgaggcgag
tacgccgaccaggtgtggaccttcaacgccaacgggtggctgtactcccaggccgaccgc
aacggccacacccaccgaatgcgctacgacaccgagggagacctggcctcgatcgtggac
acccaggaccgggtcaccaccttcgagtgggaccccgacgcctgggagcagccgacccgg
atcaccgacccggtcggcgagaccgccacggccttcacctggaacggcgacggcggcatg
gtcgcgctgaccgaccgcgcgggccagggcatcgagttcggctacgacggtgacggcctg
ctgacctcgatcaccgacgccaccggcgcggtgtgggagatcgcctacaacgccgacgac
caggtctccagcctgaccgtgccagacggcaccgaggacggagccaccaccgcctactcc
tacgccgacggtgcctggtccaacacccagaccacggtcaccgatccgggcggcggtgag
tccaccctggagttcgacgaccagggaagacagacctccgcgaccgaccaggtcggcaac
acccgctcccagacctggacggcgaactcggacgtggccaccaccaccgacgccctgcaa
gcctcggtgacctacgactacgacgagttcaacaacctcatcggcaccgaactgcccaca
ggggcggccacttcggtcgggttcgcggacacggccaacccggccaagcccaccagcgtg
accaccccggacggggacacgcttcagatgtcctacgacgacgccggcaacctcacctcg
gccgtccaggaggagatggacatcgaggtggccgacatccgttaccactccaacgggttg
gtcaaccaggtcatcgatgccaacggcaactccaccagctactcctacgaccgcgccggg
aacatgacggcgatggacgagccggggccgatgggcaccacccaatacggctacgacgcg
ctgtcacgggtcacctcggtcaccgacggcaacggtgtgaggctggagtacggctacgac
cgcctcgaccggatcgtgtccatctcccagggcggcgacctgctccaggccatcgcctac
gacggcaacggccgccagatcacgacgcacaccgaccaggcgagtgtggagcactcctac
aacggccgcggcgacctgctcgaaaccgtgcgcaccgactcggccggaagcgagaccacc
acctacgcctacgacgccgctggcaacgtcaccgagatggtcgagcacggcaagaccacc
tcctatggctacgacgccgcgttccggctcacctcgctcaccgaccacaccggggccgag
accaccttcaccaacgacgagaacaaccgccgcaccagcatcacccaccccgacggggcg
gtggaggagcgcacctacgacgactccgggcgcctgaccggcatcaccaccaccggggcc
gccgaccaggctctggtgcaagctgtctactcctacgacaacgacggcgccgacagcgac
cagttgcagtcgcgcaccgtcaacggtgagaccgagaccttcacctacgacggcctggac
cggctcaccagcgacggcaccaccgactacacctacgacgacgtcggcaacctgctgagc
gccgggggcgaggagttcgcctacaacgacgccgaccaggtcaccagcgcgcgcggggcc
gaggtgggtcatgacgaggccgggaacatgacctcgcggggtgagtacgtctacgagtac
tcggtgaccaaccagacgctgcgctccaacgacggtgagggccagctgacctcgtggctg
agttacgacaccaccgaccagacccagatgcgcggcgtcaccgacgtgcacgagggcacc
cgggtggagcggcagctgtccaacaccgcgctcggggtcaccaacatcgcctccgagggc
gagcgcaccagcttcgtgcgcgaccccgacgggcggttggtgtccatggtggcctgggac
ggtgatgagcggttccactacaccctcgaccagcagaacaccgtgctggcgctgacggct
gagggttcggaggctgagtccccggacgtggtctatgactacagcccctacggtgagcgc
acctctgagagcctggaggggaccgaggcggcggcgttgagcccgttcgggttcaccggc
gcctaccagttccaggacggcacggtgcatctgaaccaccgcttccacagcacgttcacg
ttgggcttcacccagccggacccgtcccggcaggagttgaacaactacgcctacgcccag
tgcgaccccatcaacaacaccgaccccaccgggctcaattcttgcaacgaagcgatcaat
ggtttcatcctggggcttatcgtcacggggctttcgtttccctttgccgccaccccgatg
gggtttgtcgctgcgattggatccgggctcatcgtgatcagtcaagtgcaggcaatcgat
cgggcatgcggcggtcgaatctcggctagcatgacaacctag
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