Nocardiopsis sp. LDBS0036: UIS43_15200
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Entry
UIS43_15200 CDS
T11195
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nocb Nocardiopsis sp. LDBS0036
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocb03032
]
UIS43_15200
03400 DNA repair and recombination proteins [BR:
nocb03400
]
UIS43_15200
Enzymes [BR:
nocb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
UIS43_15200
DNA replication proteins [BR:
nocb03032
]
Prokaryotic type
DNA Topoisomerases
UIS43_15200
DNA repair and recombination proteins [BR:
nocb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
UIS43_15200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
XEA83618
LinkDB
All DBs
Position
complement(3622868..3623890)
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AA seq
340 aa
AA seq
DB search
MSLRRSDPAEPGITRRRRGRGHSYHGPDGRPVTDPDQIRRIKELVVPPGWHDVWICPSPE
GHIQACGTDDAGRRQYLYHAEWRRRSEEAKYDRMLDFAELLPRIRGTLAEHLGRRGLRRE
RVLAAAVRLIDLGFLRAGGDAYAARNDSYGVASLLREHVHRRRGTVVFEFPGKSGQDQRV
ECAEPEICRVVSGLQRVRSPGQDLFAYRVGDDWHDVNTDDLNSYLREVAGEEHTVKEFRT
WHATVLAAVGVAVAVPPEDDRSLARLRTHVVREVADYLGNTEAVARDSYIDPRVFRLHER
GVTIAGALPELGGEASSGELATQGGVEEAVLRMLRDNGDA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcggcgcagcgacccggccgagccggggatcaccaggcgtcgtcgcggtcgc
ggacacagctaccacggcccggacggcaggccggtcaccgaccccgaccagatccggcgc
atcaaggaactcgtcgtgcccccgggctggcacgacgtgtggatctgcccctcgcccgag
gggcacatccaggcgtgcggcaccgacgacgcgggccgccgccagtacctctaccacgcc
gagtggcggcgccggagcgaggaggccaagtacgaccgcatgctcgacttcgccgaactg
ctccccaggatccgcggcacgctggccgagcacctgggccgccgcggactgcggcgcgag
cgcgtcctggccgcggccgtccgcctgatcgacctcggcttcctgcgggcggggggcgac
gcctacgccgcccgcaacgactcctacggggtggcgagcctgctgcgcgagcacgtccac
cgcagacgcggcacggtggtgttcgagttccccggaaagtccggccaggaccagcgcgtc
gagtgcgccgaacccgagatctgccgggtggtctccggcctccagcgcgtccgctcaccg
gggcaggacctgttcgcctaccgcgtcggcgacgactggcacgacgtgaacaccgacgac
ctcaactcctacctgcgcgaggtcgccggggaggagcacacggtcaaggagttccgcacc
tggcacgcgacggtcctggccgcggtcggggtggcggtggccgtgccgcccgaggacgac
aggtccctggcccggctgaggacccacgtggtccgcgaggtggccgactacctgggcaac
acggaggcggtggcccgggactcctacatcgacccccgcgtcttccggctgcacgagcgg
ggtgtgacgatcgccggggcgctgcccgaactgggcggtgaggcgtcctcgggcgaactc
gccacccagggcggggtggaggaggcggtgctgcgcatgctgcgcgacaacggcgacgcc
tga
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