Nocardiopsis sp. LDBS0036: UIS43_17100
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Entry
UIS43_17100 CDS
T11195
Symbol
rfbH
Name
(GenBank) lipopolysaccharide biosynthesis protein RfbH
KO
K13328
dTDP-4-dehydro-2,6-dideoxy-D-glucose 3-dehydratase [EC:
4.2.1.164
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb00523
Polyketide sugar unit biosynthesis
nocb01100
Metabolic pathways
nocb01110
Biosynthesis of secondary metabolites
nocb01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
UIS43_17100 (rfbH)
Enzymes [BR:
nocb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.164 dTDP-4-dehydro-2,6-dideoxy-D-glucose 3-dehydratase
UIS43_17100 (rfbH)
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Motif
Pfam:
DegT_DnrJ_EryC1
Beta_elim_lyase
ACP_syn_III_C
Motif
Other DBs
NCBI-ProteinID:
XEA83966
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Position
complement(4058574..4059896)
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AA seq
440 aa
AA seq
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MATSDEAAAVLDAVREHHRSTRTEREFVPGVTEIWPSGAVLDEEDRVALVAAALDMRIAA
GPSARRFESAFARRLGRRKAHLTNSGSSANLLALSSLTSHLLEDQRLRPGDEVVTVAAGF
PTTVNPILQNGLVPVFVDIELRTYNTTVERVERAIGPRTRAIMIAHALGNPFEAREMARL
AEERDLFLIEDNCDAVGSLYDGQVTGSFGDLSTVSFYPAHHLTMGEGGCVLTSNLMLARV
VESMRDWGRDCWCEPGESDTCRKRFSYQLGTLPPGYDHKYTFSHVGYNLKGTDLQAALGL
SQLDKLDSFGEARRRNWRRMREGLDGLPGLILPEATPNSDPSWFGFVVTVDPGAPFDRAE
LVHFLESRRIGTRLLFAGNLTRHPAYLDRPHRVSGELENSDTATERTFWTGVYPGLTDEM
IDYVVSSVTEFVKERHKGVF
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagtgacgaggcggcggcggttctcgatgcggtccgtgagcaccaccggtcc
acccgcaccgaacgcgagttcgttccgggtgtgacggagatctggccctccggggcggtc
ctggacgaggaggacagggtggccctggtcgcggccgccctcgacatgcgcatcgcggcg
ggccccagcgcacgccgcttcgagtccgcgttcgcccgcaggctcggaaggcgcaaggcc
cacctcacgaactccggctcctcggccaacctgctcgcgctgtcctccctgacctcgcac
ctgctggaggaccagcggctgcgccccggcgacgaggtcgtcacggtcgccgccgggttc
ccgacgaccgtcaacccgatcctccagaacgggctcgtgcccgtgttcgtggacatcgag
ctgcgcacgtacaacaccacggtcgaaagggtggaacgggccatcggcccccgtacccgg
gcgatcatgatcgcccacgcgctgggcaacccgttcgaggcgcgggagatggcgcgcctg
gccgaggagcgcgacctgttcctgatcgaggacaactgcgacgccgtgggctccctctac
gacgggcaggtgacgggctccttcggcgacctgtcgacggtcagcttctacccggcgcac
cacctcaccatgggcgagggcggctgcgtgctcacgtccaacctcatgctggcccgtgtg
gtggagtccatgcgcgactgggggcgggactgctggtgcgagcccggtgagagcgacacc
tgccgcaagcgcttcagctaccagctcgggaccctgccccccggctacgaccacaagtac
acgttctcccacgtgggctacaacctgaaggggaccgacctccaggcggcgctcgggctg
agccagctcgacaagctcgactccttcggcgaggcccggcgccgcaactggcgccggatg
cgggaggggctggacgggcttccgggcctgatcctgccggaggccacgcccaacagcgat
ccgagctggttcggcttcgtggtcaccgtggaccccggggcgccgttcgaccgggccgag
ctggtccacttcctggagtcccggcggatcggcacccgcctgctcttcgcgggcaacctg
acccggcaccccgcctacctggaccggccgcaccgcgtgtccggagagctggagaacagc
gacaccgccacggagcggaccttctggaccggggtctaccccgggctcacggacgagatg
atcgactacgtggtctcctcggtcaccgagttcgtcaaggagcggcacaagggcgtcttc
tga
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