Nocardiopsis sp. LDBS0036: UIS43_18005
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Entry
UIS43_18005 CDS
T11195
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
nocb Nocardiopsis sp. LDBS0036
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocb03032
]
UIS43_18005 (gyrB)
03400 DNA repair and recombination proteins [BR:
nocb03400
]
UIS43_18005 (gyrB)
Enzymes [BR:
nocb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
UIS43_18005 (gyrB)
DNA replication proteins [BR:
nocb03032
]
Prokaryotic type
DNA Topoisomerases
UIS43_18005 (gyrB)
DNA repair and recombination proteins [BR:
nocb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
UIS43_18005 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
PEPcase_2
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
XEA84136
LinkDB
All DBs
Position
4258748..4260685
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AA seq
645 aa
AA seq
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MAYDAGSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADAIEVTL
LADGGVCVADNGRGIPTDLHPVEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVV
NALSTALEVEIRLHGHVWRQRYEMTAPTGELVKGESTDETGTQITFWPDGDIFETTTFSF
ETLARRMQEMAFLNKGLSITIRDERPEHTDGGPTVNTFHYDEGLSDYVRHINAKKEPAHA
SIISFEEEGEGISVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYAR
DQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLR
DWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEEC
EVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRILKNAEVQAIITALGTGI
HEEFDAEKLRYHKVILMADADVDGQHIRTLLLTLLFRFMKPLVEAGNVYLAAPPLYKIKW
DQKGSDASYAFSDAERDRVIEAGIAQGKRDPRPRDMVQRFKGLGEMNANELWDTTMDPDR
RVLLQVSLEDAAQADELFSVLMGEDVESRRAFIQRNAKDVRFLDI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
ttggcctacgacgcaggttcaatcacggttctggaggggcttgaggcggtccgcaagcgc
cccggaatgtacatcggttccacaggggagcggggcctgcaccacctggtctacgaggtg
gtcgacaactccgtcgacgaggcgctggcgggccacgccgacgccatcgaggtgaccctg
ctggccgacggcggcgtgtgcgtggccgacaacggccgcggcatccccaccgacctccac
ccggtggagaagcgccccgccgtcgaggtcgtcctcaccacgctgcacgcgggcggcaag
ttcgacggcaagtcctacgcggtctccggcggcctgcacggcgtcggcgtctccgtcgtc
aacgcgctgtccaccgcgctggaggtggagatccgcctccacgggcacgtgtggcgccag
cgctacgagatgaccgcgcccaccggcgaactcgtcaagggcgagagcaccgacgagacc
ggcacccagatcaccttctggccggacggcgacatcttcgagaccaccacgttctccttc
gagacgctcgcccgccgcatgcaggagatggccttcctcaacaaggggctgtccatcacc
atccgcgacgagcggcccgagcacaccgacggcggaccgacggtcaacaccttccactac
gacgaggggctgtcggactacgtccgccacatcaacgccaagaaggagccggcgcacgcg
tcgatcatctccttcgaggaggagggcgaggggatctcggtcgagatcgccatgcagtgg
aaccagtcctacacctcctccgtgcacaccttcgccaacaccatcaacacggctgagggc
ggcacgcacgaggagggcttccgctccgcgctgaccaccctggtcaaccggtacgcccgc
gaccagaagctgctgcgcgagaaggacgacaacctcaccggcgacgacatccgcgagggt
ctgaccgccatcatctcggtcaagctggccgacccgcagttcgagggccagaccaagacc
aagctgggcaacaccgaggccaagtccttcgtccagaaggtcaccaacgagcacctgcgc
gactggttcgagcgcaaccccggcgaggccaaggacatcgtgtccaaggccagccaggcc
gcccgcgcgcgcgtggccgcccgccaggcgcgcgacctgacccgccgcaagacccttctg
gagaccacctccctcccgggcaagctgtcggactgccagtccaccaacccggaggagtgc
gaggtctacatcgtcgagggcgactcggccggcggctccgccaagggcggccgcaaccct
cacaaccaggccatcctgcccatccggggcaagatcctcaacgtcgagaagtcgcgcatc
gaccgcatcctcaagaacgcggaggtccaggcgatcatcaccgccctgggcaccggcatc
cacgaggagttcgacgccgagaagctgcggtaccacaaggtcatcctgatggccgacgcc
gacgtcgacggccagcacatccgcacgctgctgctcaccctgctgttccgcttcatgaag
ccgctggtcgaggccgggaacgtctacctggccgcgccgccgctgtacaagatcaagtgg
gaccagaagggcagcgacgccagctacgccttctccgacgccgagcgcgaccgggtcatc
gaggccgggatcgcccagggcaagagggacccgcgcccgcgcgacatggtgcagcgcttc
aagggtctgggcgagatgaacgccaacgagctgtgggacaccacgatggacccggaccgc
cgcgtcctgctccaggtcagcctggaggacgcggcccaggccgacgaactgttcagcgtg
ctcatgggtgaggacgtcgagtcgcggcgcgccttcatccagcgcaacgccaaggacgtc
cgcttcctggacatctag
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