Nocardiopsis sp. LDBS0036: UIS43_20670
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Entry
UIS43_20670 CDS
T11195
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb00040
Pentose and glucuronate interconversions
nocb01100
Metabolic pathways
nocb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
UIS43_20670
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
UIS43_20670
Enzymes [BR:
nocb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
UIS43_20670
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
XEA84623
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Position
4856350..4857633
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AA seq
427 aa
AA seq
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MRRLALPLSAVLVMTAVAPVQAAPDVGRQVLPEGDGWASAGGGTTGGADASPENVFRVST
AQEFREAVSGDEPKIVYVEGLIDANTAPDGTPLSCGDYAVDGYTLEGYLAAYDPGVWGWQ
DPSGPLEEAREASADAQAERIRVEVGSNTTVVGAGDGAEITGMSIRVVGARNVILRNLTL
SDTHDCFPGWDPGDGGEGNWNSEYDHLEVSGSTNVWIDHNTFDDGDNPGSELPEYFGRRY
EVHDGLLDIVRASDLVTVSYNHFDGRDKAILVGNSDGRTTDRGYLRTTWHHNHFDSLGQR
APRVRYGQVHVYNNHYTVATDLYQYSLGAGFESHLYAENNLFDLHDGITAGEIVGNWGGT
DIVEHGNAVMEDGRGRVTEVDLVRAHNEAYPDQALGTDLTWVPQFSTRVEPVHAVRGVPR
EAGAGVL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaggctcgcactccctctgagcgcggtgttggtgatgaccgctgtcgcgcccgtc
caggcggcgcccgacgtgggcaggcaggtcctgcccgagggcgacggctgggcctcggcc
ggaggcgggacgacgggaggcgcggacgcctccccggagaacgtcttccgcgtctccacg
gcgcaggagttccgcgaggcggtgagcggggacgagcccaagatcgtctacgtcgagggt
ctcatcgacgcgaacacggcgccggacggcacgcccctgtcgtgcggggactacgccgtg
gacggctacacgttggagggctacctggccgcctacgaccccggggtgtggggctggcag
gaccccagcggcccgctggaggaggcccgcgaggcctctgccgacgcccaggcggagcgg
atccgggtggaggtcggctccaacacgaccgtggtcggggccggggacggcgccgagatc
accgggatgagcatccgggtggtcggcgcgcgcaacgtcatcctgcgcaacctcaccctg
tccgacacgcacgactgcttccccggctgggaccccggcgacggcggcgagggcaactgg
aactccgagtacgaccacctggaggtctccggctccacgaacgtgtggatcgaccacaac
acgttcgacgacggcgacaacccgggctcggagctgccggagtacttcggacgccgctac
gaggtgcacgacggcctgctggacatcgtgcgcgccagcgacctggtgacggtgtcgtac
aaccacttcgacggccgggacaaggcgatcctggtgggcaacagcgacggccgcaccacc
gaccgcgggtacctgcgcaccacctggcaccacaaccacttcgacagcctgggccagcgc
gcgccccgcgtgcgctacgggcaggtgcacgtctacaacaaccactacacggtggccacg
gacctgtaccagtacagcctgggggcgggcttcgagtcgcacctgtacgcggagaacaac
ctgttcgacctgcacgacggcatcacggccggggagatcgtcggcaactggggcggcacc
gacatcgtggagcacgggaacgcggtgatggaggacggccgcgggcgcgtcacggaggtg
gacctggtgcgggcgcacaacgaggcctaccccgaccaggcgctgggcaccgacctgacc
tgggtgccgcagttctccacgcgggtggagccggtgcacgcggtccgcggcgtgccgcgc
gaggcgggcgccggggtgctctga
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