Nocardiopsis sp. LDBS0036: UIS43_21200
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Entry
UIS43_21200 CDS
T11195
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UIS43_21200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocb03021
]
UIS43_21200
03400 DNA repair and recombination proteins [BR:
nocb03400
]
UIS43_21200
Enzymes [BR:
nocb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UIS43_21200
Transcription machinery [BR:
nocb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UIS43_21200
DNA repair and recombination proteins [BR:
nocb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UIS43_21200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
XEA84722
LinkDB
All DBs
Position
4965371..4969249
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMVTWVDTEARERDLQSLEARISVEKQHLEQRRDSTVEDRHRKLEAD
LAELEEQGAKGDARRKVREGAEREMRQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDEML
YREMRDRFGKYFRGGMGAQAIQDRLANFELDVEAERLREIIRTGKGQKKARALKRLKVVS
AFLNTTNSPMGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARLLMLATNNILKPSDGKPVTMPTQDMIIGLFYLTTEKLGAKGEGR
SFLSPAEGIMAYDLGDLDLQARIKLRIADGAPAPKDWTPPEGWTPGEPYTLETTLGRYLF
NETTPVDYPYVNFQVGKKQVSTLVNDLAENYPKVQVATTLDALKDAGYHWATRSGLTIGI
EDVVAPPRKTEILEGYERKADKIQREYDRGLITDDERRQELTEVWTQATTEVAQDMESNF
PADNPVWMMVQSGARGNPMQVRQIAGIRGLVSNTKGETIPRPIKSSYREGLSVLEYFIST
HGQRKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTERSLWHEIGEKNAAGVVVRK
HNVENTGFGRTIAEDAVDAEGNIVLPALSDTSEQNIDKLIEAGITRVRVRSSLVCEAKIG
VCTTCYGRSMATGKPVDVGEAIGIIAAQSIGEPGTQLTMRTFHMGGSAGQDITHGLPRVQ
ELFEARIPKGVAPISEMEGRIRIDDTEKSRKIVVIPDDGTDEIAYPVPMRAQLLVTDGDH
VKVGQQLIQGAINPHEVLRIQGPRAVQQHLVSEVQEVYKSQGVSIHDKHIEIIVRQMLKR
VNILESGDTELLPGEMVERPKFERINRRVVSEGGQPAAGRPVLLGITKASLATESWLSAA
SFQETTRVLTENAIHGKSDPLLGLKENVIIGKLIPAGTGIPQYRNIRVEPTEEAKASMYS
VSGYEEPSEYTFGQGSGEAVPLEEYDFGPYNR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctggccacggccgacgacatc
cgccagtggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacgcacatctggtacttcaagggcgtgccctcccgcctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacatggtcacgtgggtggac
accgaggcccgtgagcgcgacctccagtccctggaggcgcggatctcggtcgagaagcag
cacctggagcagcgccgcgactccaccgtcgaggaccgccaccgcaagctggaggccgac
ctcgccgagctggaggagcagggggccaagggcgacgcccgccgcaaggtgcgtgagggc
gccgagcgcgagatgcgccagctgcgcgaccgcgcccagcgtgagatcgaccgcctcgac
gaggtctggaaccggttcaagaacctcaaggtccaggacctcgagggcgacgagatgctc
taccgcgagatgcgggaccgcttcggcaagtacttccgcggcggcatgggcgcccaggcc
atccaggaccgtctggccaacttcgagctggacgtggaggccgagaggctccgggagatc
atccgcaccggcaagggccagaagaaggcccgcgccctgaagcggctcaaggtcgtctcg
gcgttcctcaacaccaccaacagccccatgggcatggtgctggactgcatcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccggggccgcccggtcaccggtccgggcaaccgtccgctcaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagcccttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcggtcccgc
ccggttgtgtgggacgtcctcgaagaggtcatcaccgagcacccggtcctgctcaaccgc
gccccgacgctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtgtgcacggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgtccgccgaggcccaggccgaggcgcggctgctgatgctg
gccaccaacaacatcctcaagccgtccgacggcaagcccgtgaccatgcccacccaggac
atgatcatcggcctgttctacctgacgacggagaagctcggagccaagggcgaggggcgc
tcgttcctctccccggccgagggcatcatggcctacgacctgggggacctcgacctccag
gcgaggatcaagctccggatcgccgacggcgccccggcgccgaaggactggacgccgccg
gagggctggacgccgggggagccgtacaccctggagaccaccctgggccggtacctgttc
aacgagaccaccccggtcgactacccgtacgtcaacttccaggtgggcaagaagcaggtc
tcgacgctggtcaacgacctcgccgagaactaccccaaggtccaggtcgccacgacgctg
gacgccctcaaggacgccggttaccactgggccacccggtccggtctgaccatcggcatc
gaggacgtcgtcgcgccgccgcgcaagaccgagatcctggaggggtacgagcgcaaggcg
gacaagatccagcgcgagtacgaccgcggtctcatcaccgacgacgagcgccgtcaggag
ctcaccgaggtgtggacgcaggccaccaccgaggtcgcccaggacatggagagcaacttc
cccgccgacaacccggtgtggatgatggtccagtccggtgcccgaggcaacccgatgcag
gtgcgccagatcgccggtatccgcggcctggtctccaacaccaagggtgagacgatcccg
cgtccgatcaagtcctcctaccgcgagggcctgtccgtgctggagtacttcatctccacg
cacggccagcgcaagggcctggccgacaccgccctgcgtaccgccgactcgggttacctg
acccgtcgtctggtggacgtggcgcaggacgtcatcgtccgcgagatcgactgcggcacg
gagcgctcgctctggcacgagatcggcgagaagaacgccgccggcgtcgtcgtgcgcaag
cacaacgtcgagaacaccggtttcggccggaccatcgccgaggacgcggtggacgcggag
ggcaacatcgtcctccccgccctgagcgacacctccgagcagaacatcgacaagctcatc
gaggccgggatcacccgcgtccgcgtgcgctcgtcgctggtctgcgaggccaagatcggc
gtctgcaccacctgctacggccgctccatggcgaccggcaagccggtggacgtcggtgag
gcgatcggtatcatcgcggcccagtccatcggtgagcccggcacccagctgaccatgcgt
accttccacatgggtggttcggccggtcaggacatcacccacggtctgccccgtgtccag
gagctcttcgaggcccgcatccccaagggtgtggccccgatctccgagatggagggccgg
atccggatcgacgacaccgagaagagccgcaagatcgtcgtcatccccgacgacggcacg
gacgagatcgcctacccggtcccgatgcgcgcccagctgctcgtcaccgacggcgaccac
gtcaaggtcggccagcagctgatccagggtgcgatcaacccgcacgaggtcctgcgcatc
cagggcccgcgcgcggtgcagcagcacctggtgtccgaggtccaggaggtgtacaagtcg
cagggtgtgtccatccacgacaagcacatcgagatcatcgtccgccagatgctcaagcgg
gtgaacatcctggagtcgggcgacaccgagctgctgcccggtgagatggtcgagcggccg
aagttcgagcggatcaaccgccgcgtcgtgtccgagggcggtcagcccgcggccgggcgt
ccggtgctgctgggtatcaccaaggcctcgctggccacggagtcctggctgtccgcggcc
tccttccaggagaccacccgggtgctcaccgagaacgcgatccacggcaagagcgacccg
ctcctcggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtaccggcatt
ccgcagtaccgcaacatccgggtggagccgaccgaggaggccaaggcctcgatgtactcg
gtctccgggtacgaggagccgagcgagtacaccttcggacagggttcgggcgaggccgtt
ccgctggaggagtacgacttcggaccgtacaaccggtag
DBGET
integrated database retrieval system
