Nocardiopsis sp. LDBS0036: UIS43_21625
Help
Entry
UIS43_21625 CDS
T11195
Name
(GenBank) HAMP domain-containing protein
Organism
nocb Nocardiopsis sp. LDBS0036
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
HATPase_c
Response_reg
GAF_2
HisKA
GAF
Laminin_II
ApoLp-III
RNase_Y_N
DASH_Dad2
ATG14
Motif
Other DBs
NCBI-ProteinID:
XEA84802
LinkDB
All DBs
Position
5049297..5053733
Genome browser
AA seq
1478 aa
AA seq
DB search
MPEAVKELAADDQLDEILRALYRMRDGDFSVRLRKRGGGTMREIASVFNEVVDHSEQLSD
ELQRVGDVVRNEGRLNERVNVNPARGAWGESAQALNLLLDEVAEPVTDVAGVLDSVAEGQ
LSRRASTEGRRGELKGDLLRLATTVNRMADQMSGFAGEVTRVAREVGTEGKLGGTAQVEG
VSGAWREVTESVNQMSSRLTDQMRDISEVTTAVARGDLSRKITVDVQGEMLDLKDTVNTM
VDQLSTFADEVTRVAREVGTEGKLGGRANVRGVRGIWKDLTENVNSMADNLTNQVRDISQ
VTTSVARGDLTQKVQVDVQGEMLALKNTVNTMVDQLDSFADEVTRVAREVGTEGKLGGRA
NVKGVSGIWKDLTDNVNSMANSLTYQVRNISQVTTAVATGDLTKKITVDAQGEMLDLKDT
INKMVDQLDSFAGEVTRVAREVGTEGKLAGQAHVRDVSGVWKDLTDNVNSMANNLTYQVR
QISMVTRAVAAGDLTKKVTVNAKGEILELKDTINVMVDQLSAFADEVTRVAREVGTEGKL
GGRADVKGVSGIWNDLTENVNSMSHNLTTQVRNISEVTTAVAAGDLNKKIDVNAQGEILE
LKTTVNTMVDQLSAFATEVTRVAHEVGSQGQLGGQAKVEGVTGTWKQLTDSVNGLAGNLT
TQVRAIAEVANAVAKGDLTRNIQVDARGEMEQLKHNINLMVSNLRETTATQRDADWLKSN
VARISGHIQGHRDLKELARLIMTEVTPLIGAQHGACYLPEDQDDQENFLFYAGFGFDPDE
DRRRVRAGIGLVGEALAQQVEQQISNIPPDYVKVRSGLGEASPRNLYILPIVSEGRSLGA
IEFASYDDFRESHKNFLRQLVSLLGTTINTILANNRTEDLLEQSQQLTSQLRERSNELQR
QQEELRGKNAELRQKATQLANQNRAIELQNQQIQRSRNALEERAHQLQVSSKYKSEFLAN
MSHELRTPLNSLLILARLLADNAEQNLSAKQVEFAQTIHKAGSDLLLLIDEILDLSKVEA
GRAEVQPSEVSIAQLVDYVEATFRPVTGDQGLAFAVDVSPDIPGTLWTDEQRLQQILRNL
LSNAVKFTPQGEVRLLIEPAWALEDADLEMFVENEEVIAFTVADTGIGIAEDKLQVIFEA
FHQGDGGTSRRFGGTGLGLSISRNFARLLGGEIRVQSVPNQGSTFTLLLPVRLPDDAGER
AEEAGSPIRGLSGMDSAPMLDSGRGADTGGFGSSPLDDGFSMPDEDFDAALAALTDISDE
PLPTVPVLKAPETHAAAAEGEAPEQPAESEPRTDPERRAVLSGQRVLIVDDDVRNVFALT
SALEAQGLEVLYADNGHAGIAKLEANEDIALVLMDVMMPELDGNQTTQRIREMPQFAGLP
IISLTAKAMQGDRERSLAAGATDYVTKPVDLDHLLDVMRRWLTAGREETIAGAAADGGGG
AVPDGHSRATSGPEEAGAGHDNDPNGETGTSTPSEDLE
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggcggtcaaggaactggcggccgacgaccagctcgacgagattctgcgggcc
ctgtaccgcatgcgcgacggcgacttcagcgtccgtctgcgcaagcgcggcggcggcacc
atgcgggagatcgcgtccgtcttcaacgaggtggtcgaccacagcgaacagctcagcgac
gaactccagcgcgtcggcgacgtcgtccgcaacgagggcaggctcaacgagcgcgtcaac
gtcaaccccgcccggggcgcctggggcgagagcgcccaggcgctcaacctcctgctcgac
gaggtcgccgaacccgtgaccgacgtcgccggggtcctggactcggtcgcggagggccag
ctcagccgccgcgcctccaccgagggccgccgcggcgagctcaagggcgacctgctgcgc
ctggccaccacggtcaaccgcatggccgaccagatgagcggcttcgccggggaggtcacc
cgtgtggcccgcgaggtgggcaccgagggcaagctcggcggcaccgcgcaggtcgagggg
gtctccggagcctggcgcgaggtgaccgagtcggtcaaccagatgtcctcgcgcctgacc
gaccagatgcgcgacatctccgaggtgaccaccgccgtcgcccgcggcgacctcagccgc
aagatcacggtggacgtacagggcgagatgctcgacctcaaggacaccgtcaacaccatg
gtggaccagctgtccaccttcgccgacgaggtcacccgtgtggcccgcgaggtgggcacc
gagggcaagctcggcggccgcgccaacgtgcgcggcgtgcggggcatctggaaggacctc
accgagaacgtcaactcgatggcggacaacctcaccaaccaggtgcgcgacatctcccag
gtgacgacctccgtggcccgcggcgacctcacccagaaggtccaggtcgacgtgcagggc
gagatgctcgccctgaagaacaccgtgaacaccatggtcgaccagctcgactccttcgcc
gacgaggtcacgcgcgtggcgcgcgaggtcggtacggagggcaagctgggcggccgggcc
aacgtcaagggcgtgtcgggcatctggaaggacctgaccgacaacgtcaactccatggcc
aacagcctcacctaccaggtccgcaacatctcccaggtgacgacggcggtcgccaccggt
gacctcaccaagaagatcaccgtggacgcccagggggagatgctcgacctcaaggacacc
atcaacaagatggtcgaccagctggactccttcgccggcgaggtgaccagggtcgcccgt
gaggtgggcacggagggcaagctggccggacaggcccacgtccgcgacgtgtccggggtc
tggaaggacctgaccgacaacgtcaactccatggccaacaacctgacctaccaggtgcgc
cagatctccatggtcacgcgcgcggtggccgcgggcgacctgaccaagaaggtcacggtc
aacgccaagggcgagatcctggagctgaaggacaccatcaacgtcatggtggaccagctc
tccgcgttcgccgacgaggtcacccgggtggcccgcgaggtcggcaccgagggcaaactg
ggcggccgagccgacgtcaagggcgtctccggcatctggaacgacctcaccgagaacgtc
aactcgatgtcgcacaacctcaccacgcaggtgcgcaacatctccgaggtgaccacggcc
gtggcggcgggcgacctcaacaagaagatcgacgtcaacgcccagggggagatcctggag
ctcaagacgacggtcaacaccatggtcgaccagctgtcggcgttcgccaccgaggtcacc
cgcgtggcccacgaggtgggcagccagggccagctgggcggccaggccaaggtcgagggc
gtgaccggcacctggaagcagctcaccgacagcgtgaacggcctggcgggcaacctgacc
acgcaggtgcgggcgatcgccgaggtcgccaacgccgtcgccaagggcgacctgacccgc
aacatccaggtcgacgcccgcggtgagatggagcagctcaagcacaacatcaacctgatg
gtgtccaacctgcgcgagaccaccgccacccagcgcgacgccgactggctcaagtccaac
gtggcccgtatctccggccacatccagggccaccgcgacctcaaggagctggcccgcctc
atcatgaccgaggtgacgccgctcatcggcgcccagcacggcgcctgctacctgcccgag
gaccaggacgaccaggagaacttcctgttctacgcgggcttcggcttcgaccccgacgag
gaccgccgccgcgtccgcgcgggcatcggcctggtcggcgaggccctcgcccagcaggtg
gaacagcagatctccaacatcccgccggactacgtcaaggtccggtcgggcctgggcgag
gcctccccgcgcaacctgtacatcctgccgatcgtctccgaggggcgctcgctgggcgcc
atcgagttcgcctcctacgacgacttccgcgagagccacaagaacttcctgcgccagctg
gtgagcctgctcggcaccaccatcaacaccatcctggccaacaaccgcaccgaggacctg
ctcgaacagtcccagcagctcaccagccagctcagggaacgctccaacgagctccagcgc
caacaggaggagctgcgcggcaagaacgccgagctccgccagaaggccacccagctcgcc
aaccagaaccgggcgatcgagctccagaaccagcagatccagcgctcccgcaacgccctg
gaggagcgcgcccaccagctccaggtctcctccaagtacaagtccgagttcctggcgaac
atgtcccacgagctgcgcacgccgctcaacagcctgctgatcctggcccgcctgctcgcc
gacaacgccgagcagaacctgtccgccaagcaggtcgagttcgcccagaccatccacaag
gcgggcagcgacctgctgctgctcatcgacgagatcctcgacctgtccaaggtggaggcc
gggcgcgccgaggtgcagcccagcgaggtctccatcgcccagctggtcgactacgtcgag
gccaccttccgcccggtcaccggggaccaggggctcgccttcgccgtggacgtgtcgccg
gacatccccggcacgctgtggaccgacgagcagcggctccagcagatactgcgcaacctg
ctctccaacgccgtcaagttcaccccgcagggggaggtgcggctgctcatcgagcccgcg
tgggcgctggaggacgccgacctggagatgttcgtcgagaacgaggaggtcatcgctttc
accgtggccgacaccggcatcgggatcgccgaggacaagctccaggtcatcttcgaggcc
ttccaccagggcgacggcggcacctcgcggcgcttcggcggaaccggcctcggcctgtcc
atcagccgcaacttcgcccggctgctgggcggcgagatccgcgtgcagagcgtgcccaac
cagggctccaccttcacgctgctgctcccggtgcgcctgcccgacgacgcgggggagcgg
gccgaggaggccgggtccccgatccgcggcctgagcggcatggactcggcgccgatgctc
gattcgggccggggcgcggacaccggcggcttcggctcctccccgctggacgacggcttc
tccatgccggacgaggacttcgacgcggcactggcagccctcaccgacatcagcgacgag
ccgctgcccacggtcccggtgctcaaggcgcccgagacccacgcggcggccgccgagggc
gaggcgcccgagcagccggccgagtccgagccgcgcaccgaccccgagcggcgggccgtg
ctgagcggccagcgggtcctcatcgtcgacgacgacgtccgcaacgtcttcgcgctcacc
agcgctctggaggcgcagggcctggaggtcctctacgctgacaacggacacgccggaatc
gccaagctggaggccaacgaggacatcgcgctcgtcctgatggacgtgatgatgcccgag
ctggacggcaaccagaccacccagcggatccgggagatgccgcagttcgccggtctgccg
atcatctcgctcaccgccaaggcgatgcagggggaccgcgagcgcagcctcgcggcggga
gccacggactacgtgaccaagccggtcgacctggaccacctgctggacgtcatgcggcgc
tggctcaccgcgggacgcgaggagaccatcgccggagcggcggccgacggcgggggcggc
gcggtcccggacgggcacagccgcgcgacgtccgggccggaggaggccggcgccgggcat
gacaatgatccgaacggggagactggcaccagcaccccgagcgaagacctggagtaa
DBGET
integrated database retrieval system
