Nocardiopsis sp. LDBS0036: UIS43_23770
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Entry
UIS43_23770 CDS
T11195
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb03030
DNA replication
nocb03430
Mismatch repair
nocb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UIS43_23770
03430 Mismatch repair
UIS43_23770
03440 Homologous recombination
UIS43_23770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocb03032
]
UIS43_23770
03400 DNA repair and recombination proteins [BR:
nocb03400
]
UIS43_23770
Enzymes [BR:
nocb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UIS43_23770
DNA replication proteins [BR:
nocb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UIS43_23770
DNA repair and recombination proteins [BR:
nocb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UIS43_23770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
XEA85189
LinkDB
All DBs
Position
5552736..5553755
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AA seq
339 aa
AA seq
DB search
MGTLRMGALTRRRVGMRAADLEYAVLDMETTGLEPREGARIVEIAVVRVCGDGKFVEEFS
TLIDPRAPVGGREFHGIGEGDTVGAPTAAQVVPRLTELLSGAVVVGHNLDFEQRFLASEL
VPAGLPTGQAGLCTLRALRSQVELERYSLPKASHRLSGDWPTGQHTALGDARACAKLLAE
MLTNAPGELRYGGPAPKRLTVPDPVPGPVGAAGPVRWKPRTSSVPGGLPPLSPWQARWRP
HELDPLLCGGAFGATDRAIAEMAAHRDTRFRERLAAAAAVTGGLAATAAGGLLLRMAGGG
GTRDLGYPAGRGDGSPERLLGRIGRSVLRDRPGFTDRTG
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgctgcggatgggcgcgctgacccggcgcagggtcggcatgcgggcggcggac
ctggagtacgcggtgctcgacatggagaccactggcctcgaaccgcgcgagggcgcgcgc
atcgtggagatcgccgtggtgcgcgtgtgcggcgacggcaagttcgtggaggagttcagc
actctgatcgacccgcgcgcgccggtgggcggccgggagttccacggcatcggcgagggc
gacacggtgggcgccccgaccgcggcccaggtggtgcccagactcaccgaactgctctcc
ggggcggtcgtggtcggccacaacctcgacttcgaacagcgcttcctggcctcggaactg
gtgcccgccgggcttcccacgggccaggccgggctgtgcacgctgcgcgcgctgcgctcc
caggtggagctggagcggtactcgctgcccaaggcctcccaccggctcagcggagactgg
ccgaccggacagcacaccgcgctgggagacgcccgtgcctgcgccaagctgctcgcggag
atgctcaccaacgcccccggcgaactgcgctacggcggtcccgcgcccaagcggctcacg
gtgccggacccggttcccggcccggtcggcgctgcggggcccgtccgctggaagccgcgc
acgtcctcggtgcccggcggactgcccccgttgagcccctggcaggcgcggtggcggccc
cacgagctggacccgctgctgtgcggcggggccttcggcgccacggaccgcgccatcgcg
gagatggccgcgcaccgggacacccgcttccgcgagcggctggccgcggccgccgcggtg
acgggcgggctcgcggccaccgccgcgggcggcctgctgctgcgcatggccggcggcggg
ggcacgcgcgacctcggttacccggccggacgcggcgacggctccccggaacggctgctc
ggccggatcggccggtccgtgctcagggaccggccggggttcacagaccggacagggtga
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