Nocardiopsis sp. LDBS0036: UIS43_24230
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Entry
UIS43_24230 CDS
T11195
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nocb Nocardiopsis sp. LDBS0036
Pathway
nocb00040
Pentose and glucuronate interconversions
nocb01100
Metabolic pathways
nocb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
UIS43_24230
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
UIS43_24230
Enzymes [BR:
nocb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
UIS43_24230
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
XEA85272
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Position
5674443..5675498
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AA seq
351 aa
AA seq
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MRPHPIAAAAAAALLCAALTSCSPEGEEAATQPQTGAAAEPDTEADESGSPAEQTPDETP
SETPEGERGGPVGWAGEPLERDGEEYPGAVGGAEGETVTASDAGELADHLSAEEPLTVEV
TGAIDLDGTVEVGSDKTLVGVEGGAELTGGRLVVDGASNVILSNLRVEADGTALSVRGGA
HHVWVDGSTFSGGGDAPLVSVTGGADHVTLSWNHFADAESALAVGGGEEEPGALRVTVHH
NYFDGTAGRHPRARFAEHVHVFNNYFRANEEYGVESADDSNVLVEGNYFEGTRLSVATSE
EEPGNVVTRDNLLVDSAQPDLLGEVADPPYAYEMDDTARVPDVVSAEAGVS
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgagacctcacccgatcgccgccgcggccgcggcggcgctgctgtgcgctgccctcacc
tcgtgttccccggaaggggaggaggccgcgacacagccgcagaccggtgccgccgccgaa
ccggacacggaggccgacgagtccgggtccccggcggagcagaccccggacgagactccg
tcggagacaccggagggggagcggggcgggccggtcggctgggcgggcgagccgctggag
cgcgacggtgaggagtaccccggcgcggtcggcggggcggagggggagaccgtcaccgcc
tccgacgccggggagctggccgaccacctgtccgccgaggagccgctcaccgtcgaggtc
accggagcgatcgacctggacgggacggtggaggtcggctcggacaagaccctggtgggt
gtcgagggcggcgccgagctcaccggcgggcggctggtggtcgacggagccagcaacgtc
atcctgtccaacctgcgggtggaggccgacgggaccgcgctgtccgtgcgcggtggcgcc
caccacgtgtgggtggacggctccacgttctccggcggcggggacgcccccctcgtctcg
gtgaccggcggcgccgaccacgtcaccctgtcctggaaccacttcgccgacgccgagtcg
gcgctcgccgtcggcggcggggaggaggagccgggggcgctgcgggtcaccgtgcaccac
aactacttcgacgggacggcgggacgccaccccagggcgcggttcgccgagcacgtgcac
gtgttcaacaactacttccgggccaacgaggagtacggggtggagtcggccgacgactcc
aacgtcctggtggagggcaactacttcgagggcacccggctctcggtggccacctcggag
gaggagcccggcaacgtggtcacccgcgacaacctgctcgtggactccgcgcagcccgac
ctgctcggcgaggtggccgaccctccctacgcctacgagatggacgacaccgcccgcgtc
cccgacgtggtctcggcggaggccggggtcagctga
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