Nocardiopsis sp. LDBS0036: UIS43_24980
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Entry
UIS43_24980 CDS
T11195
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
nocb Nocardiopsis sp. LDBS0036
Brite
KEGG Orthology (KO) [BR:
nocb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nocb03009
]
UIS43_24980 (rimO)
Enzymes [BR:
nocb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
UIS43_24980 (rimO)
Ribosome biogenesis [BR:
nocb03009
]
Prokaryotic type
ribosomal protein modification factors
UIS43_24980 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
XEA85416
LinkDB
All DBs
Position
5875072..5876514
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AA seq
480 aa
AA seq
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MSSRRTVSLVTLGCARNEVDSEELAGRLSAGGWDLVEGDTEADVTIVNTCGFIDAAKQDS
IETLLEAAENGGRVVAAGCMAERYGSELAQALPEAQVIGFDDYAAITDRLDDVVAGRTLV
PHDPRDRRTLLPISPAERDASQAHVPGHASFAESAGAEGTELPYRASVPRRRLVGGPVAN
LKIASGCDRRCTFCAIPTFRGAYLSRRPDDIVREAEWLASEGVREVFLVSENSTSYGKDL
GDVRALEKLLPRLAAVEGLERVRVSYLQPAEVRPGLVDVLTGTPGVVPYFDLSFQHASGT
LLRRMRRFGDRERFLELLDTVRKRAPEAGSRSNFIVGFPGETEAEFEDLVSFLSEARLDA
IGVFGYSDEEGTEAFGHEGKLPDEVVAERVDRLNRLSEELMTQRAEERIGSEVTVLVETV
LEDGAYEGRAEHQAPEVDGSTILYGEGLAVGDLVRATVIQSAGADLIAEQDDTHGEAADR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcgccgtactgtctcactcgtcaccctggggtgtgcgcgtaacgaggtcgac
tccgaagagctggccgggcgcctgtccgctggcggctgggacctcgtcgagggcgacacc
gaggccgacgtcaccatcgtcaacacctgcgggttcatcgacgcggccaagcaggactcc
atcgagaccctcctggaagcggcggagaacggcggcagagtcgtcgccgccgggtgcatg
gccgagcgctacggctccgagctggcccaggccctgcccgaggcgcaggtcatcggattc
gacgactacgccgccatcaccgaccggctcgacgacgtcgtggccgggcggaccctggtc
ccgcacgacccccgcgaccggcgcacgctgctgccgatcagcccggccgagcgcgacgcc
tcccaggcccacgtccccggccacgccagcttcgccgaatccgccggggccgagggcacc
gagctgccctaccgcgcctccgtcccgcgccgccgcctcgtcggcggaccggtggccaac
ctcaagatcgcctccggctgcgaccggcgctgcaccttctgcgccatcccgaccttccgg
ggggcctacctctcccgccgccccgacgacatcgtgcgcgaggccgagtggctggcctcc
gagggcgtgcgcgaggtgttcctggtcagcgagaactccacctcctacggcaaggacctg
ggcgacgtgcgcgccctggagaagctcctgccccgcctggccgcagtcgagggcctggag
cgggtccgggtcagctacctccagcccgccgaggtccgccccggcctggtggacgtgctc
accgggacccccggcgtggtgccctacttcgacctgtccttccagcacgccagcggcacc
ctgctgcgccgcatgcgccgcttcggagaccgcgagcgcttcctggagctgctggacacg
gtccgcaagcgcgcgcccgaggcgggctcgcgctccaacttcatcgtgggcttccccggt
gagaccgaggccgagttcgaggacctggtctccttcctctccgaggcccggctggacgcc
atcggcgtgttcggctactccgacgaggagggcaccgaggccttcggccacgagggcaag
ctgcccgacgaggtcgtcgccgagcgcgtggaccggctcaaccgcctctccgaggagctg
atgacccagcgcgccgaggagcggatcggttcggaggtcaccgtcctggtggagacggtg
ctggaggacggcgcctacgagggccgcgccgagcaccaggcacccgaggtggacggcagc
acgatcctctacggcgagggcctcgccgtcggcgacctggtgcgcgccaccgtcatccag
tcggccggggccgacctcatcgcggagcaggacgacacccacggggaagccgcggacaga
tga
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