Candidatus Nanohalococcus occultus: SVXNc_0073
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Entry
SVXNc_0073 CDS
T10160
Symbol
cdc48
Name
(GenBank) ATPase of the AAA class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nocc Candidatus Nanohalococcus occultus
Pathway
nocc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nocc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SVXNc_0073 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocc03019
]
SVXNc_0073 (cdc48)
03009 Ribosome biogenesis [BR:
nocc03009
]
SVXNc_0073 (cdc48)
04131 Membrane trafficking [BR:
nocc04131
]
SVXNc_0073 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nocc04147
]
SVXNc_0073 (cdc48)
Messenger RNA biogenesis [BR:
nocc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SVXNc_0073 (cdc48)
Ribosome biogenesis [BR:
nocc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SVXNc_0073 (cdc48)
Membrane trafficking [BR:
nocc04131
]
SNARE
SNARE associated proteins
Others
SVXNc_0073 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SVXNc_0073 (cdc48)
Exosome [BR:
nocc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SVXNc_0073 (cdc48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
TIP49
CDC48_2
AAA_22
AAA_2
AAA_33
AAA_14
AAA_5
AAA_lid_PRS2_C
nSTAND3
AAA_18
NPHP3_N
AAA_28
RNA_helicase
IstB_IS21
AAA_3
AAA_7
Sigma54_activat
DUF815
SLFN-g3_helicase
Mg_chelatase
NACHT
ATPase
AAA_24
TsaE
AAA_17
Bac_DnaA
NB-ARC
ABC_tran
Zeta_toxin
Vps4_C
Parvo_NS1
AAA_30
DUF5906
PhoH
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WEL19105
LinkDB
All DBs
Position
complement(65510..67780)
Genome browser
AA seq
756 aa
AA seq
DB search
MTENEDVKLRVGEVPPNAQQDIGRGIIRIDSTVMEELEIAEGDAVTIEGGRKTVGRVARS
YPADKGLGIARMDGYMRKNAGTSLGEKVTVQKAELKEADRVTLAPAEEGVVIQVSNPNIF
KRALSGRAVTKGDIVVPGDGDGRKSVFDEMFDLDVDQFRFSFGETKLAVVNTKPNGPVKI
TENTEIEVKQQAVKGGSQEQQVQVPEVTYEDIGGLDSEIQQVREMIELPLKHPEVFQQLG
IDAPSGVLLHGPPGTGKTLLAKAVANEADATFMSINGPEIMSKYYGESEKQLREKFEEAQ
DNSPAIIFIDEIDAIASKRGEAGGEVERRVVAQLLSLMDGLEERENVIVIAATNRVDAID
SALRRGGRFDREIEIGVPNRQGRKEILQIHTRNMPLTDEVELDSVADMTHGYVGADLEAV
CKEAAMSVLRNVLPEIDLDDEIPSEIMEKLVVNQGALKEGIRKVQPSAMREVMVEVPKVS
WEDVGGLHDTQEKLQEMVEWPQKYPERFKRMGIEVPKGILLYGLPGTGKTLLAKAVANEA
NANFISIKGPEIFSKYVGESEESIREVFKKARQVAPCILFIDEIDSIATRRGSRSDSGVG
DRVVNQLLTELDGIESLEGVTVIAATNRPDLIDPALLRPGRIDRSIEVEVPDVEGRKKIL
DVHTGKMPLAEDIDLEKLSEDLEGYVGSDIEALCREAGMKALRGDPDSEEVTLEDFEEAM
KEVKPTATEENIDHYKQMMQRMEEIDTSDKTPDYFG
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaacgaagacgttaagctgagagtgggagaggtcccgccaaacgcacagcaa
gacataggccgaggaatcatccgcatagactcaacggtgatggaagagctagagatagcc
gaaggcgatgccgtaacaattgaaggcggccgcaaaaccgttggaagagtagcaagaagc
tatccggccgacaaaggacttggaatcgcacgcatggatggctacatgcggaaaaacgca
ggcaccagcctaggagagaaagtaacagtacaaaaggcagagttaaaagaagcagataga
gtaacactcgctccagccgaagaaggagtagtcatccaggtatcaaaccccaacatcttc
aaacgcgcactttccggacgcgcagtcaccaaaggcgatatagtagtacccggagacggc
gacggacggaaaagcgtatttgacgagatgttcgacctggacgtcgatcagttccggttc
tcattcggagagaccaagctagcggttgtaaacaccaagccgaacggtcctgtaaagata
actgagaacacggagatcgaggtcaaacagcaggctgtaaagggcggaagccaggaacag
caggtccaagtaccagaggtcacctacgaggacatcggaggacttgacagcgagatccag
caagtaagagagatgatcgagctacctctaaagcatccagaggttttccaacagctggga
atcgatgccccaagcggagtactgctacacggaccgccgggaaccgggaagaccctgcta
gcgaaagcagtggcaaacgaagccgatgcgactttcatgtccattaacggcccggagatc
atgtccaagtactacggagagtccgaaaaacagctgcgtgaaaagttcgaagaagcacag
gataactctccggcaatcatcttcatcgacgagatagatgccatcgcctctaaacgtgga
gaagccggcggagaagtagagcgaagagttgtcgcacagctactttcactgatggacggt
cttgaggaacgtgaaaacgttatcgttatcgcagcgacaaaccgcgtggatgcaatcgat
tccgcacttagacgtggaggacgtttcgaccgtgagatcgagatcggtgttccaaaccgc
cagggacgtaaggaaatcctgcagatccacacccggaacatgccgctgacagatgaagtc
gagttagattcggtcgcggacatgacacacggctacgtcggagcagacctagaagcagtc
tgtaaggaggctgcgatgagcgtcttacggaacgtattacctgagatcgatctggacgat
gagataccaagcgagataatggagaaactggtcgtaaaccagggcgcactcaaggaaggc
atccggaaagtccagccatccgctatgagagaggtcatggtggaagttccgaaggtctca
tgggaagacgtcggaggcctacacgacacccaggaaaagcttcaggaaatggtcgagtgg
ccacagaaataccctgaaaggttcaaacgcatgggcatcgaagttccgaaaggaatctta
ctttacgggctaccgggaaccgggaagacactgctagcgaaagcagtagcaaacgaggca
aatgcgaacttcatttcaatcaagggacctgagatcttctccaaatacgtcggagagtcc
gaagaatcaatccgagaagtcttcaagaaagcccggcaggtcgcaccttgtatcctgttc
atagatgagatcgattcaatcgcaacccggagaggctcgagaagcgactccggtgtcggg
gaccgagtagttaaccagctactgacagaactcgatggaatcgaaagccttgaaggcgtc
acagtcatcgcggcaaccaaccgaccggatctgatcgatccagcgctattgagacctgga
agaatcgataggtcgattgaagtcgaggtgccggacgtagaaggacgcaagaagattctc
gatgtccacacaggcaagatgcctctagccgaggacattgacctagagaaactatcggaa
gatctcgaaggatacgttggcagcgatatcgaagcattatgccgcgaagcaggtatgaaa
gctctgcgaggcgatccggacagcgaagaagtaacattagaggacttcgaggaagcaatg
aaggaagttaagccaaccgcgacagaggaaaacatcgatcactacaagcagatgatgcag
agaatggaagagatcgatacctccgataaaacaccagattacttcggctag
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integrated database retrieval system
