Candidatus Nanohalococcus occultus: SVXNc_0197
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Entry
SVXNc_0197 CDS
T10160
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
nocc Candidatus Nanohalococcus occultus
Pathway
nocc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nocc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SVXNc_0197 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocc03021
]
SVXNc_0197 (rpoB)
Enzymes [BR:
nocc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SVXNc_0197 (rpoB)
Transcription machinery [BR:
nocc03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
SVXNc_0197 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-ProteinID:
WEL19228
UniProt:
A0ABY8CDE6
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All DBs
Position
complement(174196..175998)
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AA seq
600 aa
AA seq
DB search
MTKVFLDGELVDEIEDPSEVKEALIEKRRSGGLRSEIGVYYAEDKDELRISSDAGRVQRP
VIIVRDGEPQMTEEQEQKLAEGEVTIEDLVEEGVLEFIDAEEEENAYVAMDEDEVTEEHT
HMEIDPAITHGLSASLVVFPQNNRGDRVNFGAKMSGQGIGMYTREFHQRFDTNANVMHYA
QQPITETQTYDTMLGEHPIGQNMVVALGTFEGYNIEDSVIMNQGSIDRGLERSTYLRTYK
TEAQRFWGGQKDKIEQPDKDVRGYRNEEAYKHLDHDGLVNPETEVNSDDVLVGKTSPPKF
LGSGGGEEVKMGLADRRETSLTVRHGEQGKIDKLMVSETGDGDKLIKIKLRENRIPELGD
KFATRHGQKGVIGMIVPEENMPFTKQGVTPDMILSTHAIPSRMTVSQLIEIIAGKTGAMR
GEKVDGTAFHSEDKDEIREELEELGFEYSGKETMYNGITGEEMEAEIMIGPGYYLKLDHQ
VGDKIHARGRGPVTLLTKQPTEGRSQEGGLRLGEMEKDVFVGHGASLLLKERFGADATQI
HIDEDSGDIGYYDHQQNKVVKPSGEDGEFEEAEVPHAFLLLMNELKSMMMDTDLNLEEEN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaagtatttttagacggcgaactggtcgacgagatcgaggatccaagtgaagtc
aaggaagctttaattgagaaaagacggagcggaggtcttcgaagcgagattggggtctac
tacgcagaggacaaagacgagctgagaatctcttcggacgcaggacgagttcagagacct
gtaatcatcgtcagagacggagagcctcagatgaccgaagagcaagaacagaagcttgcc
gaaggagaggtcacaatcgaggacctagttgaagaaggagtcctagagttcatcgacgct
gaagaagaggaaaacgcttacgtcgcaatggatgaagacgaagtaacagaggaacacacc
cacatggagatcgatccggcgatcacccacggactttcagcctcactggttgtattccct
cagaacaaccgaggagaccgtgttaacttcggagccaagatgtccggccagggtatcgga
atgtacacccgtgagttccaccagagattcgatactaacgcaaacgtaatgcattacgca
cagcagccgatcacagaaacccagacctacgatacgatgcttggagagcatccgatcgga
cagaacatggttgtagccctcggaactttcgaaggatacaacatcgaggactcggttatc
atgaaccagggttcaatcgatcgtggactggaaaggtctacctaccttcgtacctacaag
acggaagcccagcgtttctggggaggacagaaggataagatcgagcagcctgacaaagac
gtcagaggatacagaaacgaggaagcttacaagcacctcgatcacgatggacttgtcaac
ccggagacagaggtcaactcggatgacgtacttgtcgggaagacaagccctccaaagttc
cttggatccggcggcggagaggaagtcaagatgggactcgcagatcgtagagaaacatct
ttgacagtacgccacggagagcagggtaaaatcgataaactaatggtttccgagacagga
gacggtgacaagctgatcaagatcaagctacgtgaaaaccgtattccagaactcggagac
aagttcgcaactcgacacggacagaaaggtgttatcggaatgattgttccggaagagaac
atgcctttcacaaagcagggagtcacacctgatatgattctatcgacccacgctatccca
agccgtatgacagtctcacagctgattgagataatcgctggtaagacgggcgctatgaga
ggagagaaggtcgatggtacagcgttccactccgaggacaaagacgagatccgagaggag
ctagaagagcttggattcgagtactccggaaaggagacaatgtataacggcatcaccgga
gaggagatggaagcagagatcatgatcggaccaggatactacctcaagctcgaccaccag
gtcggggacaagatccacgcaagaggacgtggaccggtcacactgcttacaaagcagcca
accgaggggcgttcacaggaaggtggactaaggctcggagagatggaaaaggacgttttc
gtaggccacggagcatcacttctcttgaaggagaggttcggtgctgacgccacacagatc
cacattgacgaggactctggagacatcggttactacgatcaccagcagaacaaggtcgtc
aagcctagcggtgaagacggtgagttcgaggaagcagaagtgcctcacgcattcttgctg
ctgatgaacgagttaaagtccatgatgatggatacagacctcaacttggaggaagaaaac
taa
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