Candidatus Nanohalococcus occultus: SVXNc_0198
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Entry
SVXNc_0198 CDS
T10160
Symbol
rpoB2
Name
(GenBank) DNA-directed RNA polymerase subunit B''
KO
K03045
DNA-directed RNA polymerase subunit B" [EC:
2.7.7.6
]
Organism
nocc Candidatus Nanohalococcus occultus
Pathway
nocc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nocc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SVXNc_0198 (rpoB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocc03021
]
SVXNc_0198 (rpoB2)
Enzymes [BR:
nocc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SVXNc_0198 (rpoB2)
Transcription machinery [BR:
nocc03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
SVXNc_0198 (rpoB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WEL19229
UniProt:
A0ABY8CDD2
LinkDB
All DBs
Position
complement(176108..177565)
Genome browser
AA seq
485 aa
AA seq
DB search
MQEEFLSQLIEENMVKHQIESYNRFVEDRVQAILNEVGEIEPELPDGEELVIKIVDVEIE
RPKLNEADGSIRQITPKEARMRDLTYSSEIKVEMTPIFEGVRQESEEVTIGRIPVMVGSE
LCWTSEMDEEELRHAGEDPKDTGGYFIINGSEKTIIAMEEFANNKPVYQDDDGEQVCRIN
SENQGYVQRHILRRDDEIVNISFANVKKTPAVALLRGLGLETDKEIVEAIGDDYASDVYL
NMYETGASNQEEAYEYIAGKAGVTNDIEERVEKILDEYLLPHLGQEPDVRDEKAEFLATL
IRNTIALGKGDIEEDDMDHYANKRMNLAGELLEMQFRSVFLGKWGLLARMKYNFKKSAKR
GRLPSLQSTVVADTLTKQIMGAMATGNWVGGRSGICQRLERGNRIKTLAHLRNIVSPLSS
ERQHFEARDLHPTQWGRVCPIKTPEGMNIGLRTHLAMSADVSTGLSEMEKNSLRAKLEET
GIDAR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagaatttctatctcagctgatcgaggaaaacatggtaaaacaccagatcgaa
tcctacaaccgctttgtcgaagacagagtacaggcaatactaaacgaggtaggagagatc
gaaccagagcttccggacggagaagagctggttatcaagattgtcgacgttgaaatcgaa
cgtcctaaactgaacgaggctgacggcagcatccgacagatcacaccgaaggaagcacgg
atgagagacctgacatactcatcggagatcaaggtagagatgacaccgatcttcgaggga
gtccgacaggaaagcgaggaggtcacaatcggccgaatccctgttatggttggatcagag
ctttgctggacaagcgaaatggatgaagaagagctaagacatgctggagaagatcctaag
gataccggaggatacttcatcatcaacggatccgagaagacaattattgcgatggaggag
ttcgcgaacaacaaacctgtctaccaggacgatgacggcgaacaggtatgtagaatcaac
tccgagaaccagggatacgttcagagacacattctaaggagagacgatgaaatcgtaaac
atcagctttgctaacgtaaagaaaactccggcggtcgctcttttgagaggtctcggactt
gagaccgacaaggagattgttgaagcaatcggagacgattacgcttcagatgtttatctg
aacatgtacgagacaggagcttcgaaccaggaagaggcttacgagtacatcgcaggtaag
gcaggagttacaaacgatattgaagaaagagtcgagaagattctcgatgagtaccttcta
ccgcatctcggtcaggaaccggatgtaagagatgagaaggcagagttcctggcaactttg
atcaggaacacgatcgctctaggcaagggcgatattgaagaagacgacatggaccactac
gcgaacaagcgtatgaacctggcaggcgagctactggaaatgcagttcagaagtgttttc
ctcgggaaatggggtcttctagcacgaatgaagtacaacttcaagaaatcagctaaaaga
ggacgacttccttcactccagtcaacagttgtcgcagacactctcacaaaacagatcatg
ggagctatggcaacaggtaactgggtaggaggacgttcgggaatctgtcagagacttgaa
agaggaaacaggatcaagacactggcacacctcagaaacattgtctccccgctttcaagc
gagagacagcacttcgaggcaagagaccttcacccaacacagtggggacgtgtctgccct
atcaagacaccggagggtatgaacatcggtcttagaacacatctagcgatgtcagctgat
gtttcaacaggtctttccgagatggagaagaactcgttgagagccaagcttgaggagaca
gggatcgacgcaaggtga
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