Candidatus Nanohalococcus occultus: SVXNc_0211
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Entry
SVXNc_0211 CDS
T10160
Symbol
sen2
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
nocc Candidatus Nanohalococcus occultus
Brite
KEGG Orthology (KO) [BR:
nocc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nocc03016
]
SVXNc_0211 (sen2)
Enzymes [BR:
nocc01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
SVXNc_0211 (sen2)
Transfer RNA biogenesis [BR:
nocc03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
SVXNc_0211 (sen2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
HHA
Sen15
HU-HIG
Motif
Other DBs
NCBI-ProteinID:
WEL19240
UniProt:
A0ABY8CFI0
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All DBs
Position
185360..185899
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AA seq
179 aa
AA seq
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MFEGKLYSSGVKVFDEDQAEQIHEDYYYGKFLENGDLHLSPSEAMHLVDREEIVIEKNGD
ELSRDELYDEFEAIDEEFGYKYPVYSDLRERGLIVKSGFKFGSHFRVYERGVNPYTGGKK
QQSQHTKYVVHAVPENHTMSFQEMSRAVRLAQNIRASMLWGVVDSEEGVTYYEVEHTSL
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaggaaaactctacagctcaggagtcaaggtattcgacgaggatcaggccgaa
caaatccatgaagactattactacggtaagtttctggagaacggggatctacatctttct
ccaagtgaggcaatgcacttggttgaccgcgaggaaattgtaatagagaaaaacggcgat
gaactgtctagagatgagctttacgatgagttcgaggcgattgacgaagagttcggttac
aagtatccggtctacagtgatctacgggagcggggactgatcgtgaaaagcggtttcaag
ttcggctcgcatttccgggtctacgaacgcggagtcaatccctacactggcgggaaaaaa
cagcagagccagcacaccaagtacgtggtacatgccgtacctgagaaccatacgatgagc
ttccaggaaatgtcccgagcagtccgtctcgcccagaacatccgcgcatcaatgctttgg
ggagtagtcgactccgaggaaggcgttacttactacgaggtcgaacacactagtctctaa
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