Candidatus Nanohalococcus occultus: SVXNc_0688
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Entry
SVXNc_0688 CDS
T10160
Symbol
alkA
Name
(GenBank) 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
nocc Candidatus Nanohalococcus occultus
Pathway
nocc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nocc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SVXNc_0688 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocc03400
]
SVXNc_0688 (alkA)
Enzymes [BR:
nocc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SVXNc_0688 (alkA)
DNA repair and recombination proteins [BR:
nocc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SVXNc_0688 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
WEL19702
LinkDB
All DBs
Position
complement(609549..610106)
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AA seq
185 aa
AA seq
DB search
MTDWMDSEIKELYEEHGEKTLEKSECPFKRILVSIINQQISTEAGAAIQERFFDRFELTP
ESILEADEDRMSDVGLSSQKSDYMKSAAEHFIEDDLTAERFGEMSDEEVIEEMTEIRGIG
DWTAKMFLMFALGREDVFPVEDLGIRRAMAGVYGIESRKEMREKAEEWRPKRSIASLYLW
EFRND
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactggatggactctgagatcaaagagctttacgaggaacacggcgagaaaacg
ctggaaaagagtgagtgtcctttcaaacgaatcctggtctcgatcatcaaccagcagatc
tcgactgaggctggagctgctatacaggaacggtttttcgaccgtttcgagttaactccg
gaaagcattcttgaagccgatgaagatcggatgagcgatgtcggcttatcgagccagaag
agtgattacatgaagtccgcagcagagcatttcatcgaggacgatctcactgccgagaga
ttcggggaaatgtctgatgaggaggttatcgaggagatgacggagatacgcggtatcggg
gactggacggcaaagatgtttctgatgtttgctttaggccgtgaagatgtttttcccgtc
gaagaccttgggataagaagagctatggctggagtttacggcatcgagtcccggaaagaa
atgagggaaaaagccgaggaatggagaccgaagagatctattgcttcgctgtatctttgg
gaatttagaaacgattga
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