Candidatus Nanohalococcus occultus: SVXNc_0773
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Entry
SVXNc_0773 CDS
T10160
Symbol
xpb
Name
(GenBank) DNA excision repair protein ERCC-3
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nocc Candidatus Nanohalococcus occultus
Pathway
nocc03022
Basal transcription factors
nocc03420
Nucleotide excision repair
Brite
Enzymes [BR:
nocc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVXNc_0773 (xpb)
Transcription machinery [BR:
nocc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SVXNc_0773 (xpb)
DNA repair and recombination proteins [BR:
nocc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SVXNc_0773 (xpb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WEL19782
LinkDB
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Position
666864..668486
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AA seq
540 aa
AA seq
DB search
MPDDKYEDFSREQLIERISKLEDQAIFFEPQREIIVSSPSDELLGTVSDIAHLESSSGDH
YKFEVREMDIWNSELSLEEMKEKYTEVVGSHPRFLEWVERTYNKSQMFSIEHEGRYHSLV
GQEPERMEWARSIDKVRKNLSVDLSDTKSRIAMGSKSRAEIKEALLKKGYPVQDNSKFRE
VDESIGADLTIDLRDYQEDYVERAYDERAAVLANPAGSGKTVTSIGLMAKVDSPTLVLVP
QRSLVEQWKREILDKTTITEDQIGEYHGDTKEMNDVTIATYHIAGEKTSLFRNDWGLIIF
DEVHHIPSQLFRKTASLQSTRRIGLSASPVREDSKEREIFALIGKEIGSDWARFFAEEHV
HKPDVEIQFAEWESDAYRHRYEQASGIKKAIVASKNPAKKQYMKDLLEKHEDNKIVVFCD
WIDQGEELSKQFDIPFVSGETDFEDREEYFEEFRNDERSALIVSRIGDEGLDLPDAEVGI
IMSGQGGSRRQATQRAGRVMRPFGDAQVYLIATKGSNEEDFVKNQVEHLKEKGVPVTVKD
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgataaatacgaggacttttccagagaacaactaattgaaagaatcagcaag
cttgaagatcaggcaatcttcttcgagccacagcgagagataattgtatcaagtccgagc
gacgaactgctcggcacagtatcggatatcgcgcacctagagtcctcgagcggagaccac
tacaagttcgaggtccgggagatggatatctggaactccgagctatccctggaggagatg
aaagaaaagtacacggaagtcgttggcagccatccacgtttcctcgagtgggttgaaagg
acttacaacaagagccagatgttcagcatcgaacacgaggggcgttaccactcgcttgtc
ggccaagaaccggaaagaatggagtgggcgcgttcaattgacaaggtacggaagaaccta
tcagttgatctaagtgataccaagtcacggatcgcgatgggatcaaagagtcgggcagag
atcaaggaagcactgttgaagaaaggataccctgttcaggacaactcgaagttccgggaa
gtcgatgaatcgatcggagcagacctcacaatcgatctcagagactaccaggaagattac
gttgagagagcctacgatgagcgagcagcagtgcttgctaacccggcaggatccgggaaa
accgttacctcgattggtttgatggcgaaagttgattcaccgacgctggtgcttgtacca
cagcgttcgctggttgaacagtggaaaagagagatactcgataagacaacaatcacagag
gatcaaatcggagagtaccacggcgatacaaaggagatgaacgatgtaacgatcgcaaca
taccatatcgcaggagaaaagacctcgcttttccgcaatgactggggtctgatcatcttc
gatgaagtacaccacatcccttcccagcttttccggaaaaccgcatccctacagagtacg
cggaggatcggtctttcagcctcacctgtccgtgaagactcgaaggaaagagagatcttc
gcactgattggaaaggagatcggaagcgactgggcgcgtttcttcgccgaagaacacgtt
cacaaaccggatgtggagatccagttcgcagaatgggagtcagatgcctaccggcaccgt
tacgagcaggcaagcgggatcaagaaagcgatcgtcgcatcgaagaacccggctaaaaaa
cagtacatgaaagacctgctggaaaaacacgaggacaacaagatcgttgtcttctgtgac
tggatcgaccagggagaggaactatccaaacagttcgacatcccgttcgtttcaggcgag
accgacttcgaggaccgtgaagagtacttcgaggagttccgaaacgatgagcgctccgca
ctgattgtctcccgtatcggagatgaaggactggaccttccggatgcggaagtagggatt
atcatgtccggtcagggaggctcccggcgtcaggcaactcagagagccggccgagttatg
cgtccgttcggagacgcacaggtctatttgatcgcgacgaaaggttccaacgaggaagac
ttcgtgaaaaaccaggttgaacatctaaaggagaaaggagttcccgtaacggtgaaagac
tga
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