Candidatus Nanohalococcus occultus: SVXNc_0873
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Entry
SVXNc_0873 CDS
T10160
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit E'
KO
K03049
DNA-directed RNA polymerase subunit E' [EC:
2.7.7.6
]
Organism
nocc Candidatus Nanohalococcus occultus
Pathway
nocc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nocc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SVXNc_0873 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocc03021
]
SVXNc_0873 (rpoE)
Enzymes [BR:
nocc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SVXNc_0873 (rpoE)
Transcription machinery [BR:
nocc03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
SVXNc_0873 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
RNA_pol_Rbc25
RisS_PPD
Motif
Other DBs
NCBI-ProteinID:
WEL19880
LinkDB
All DBs
Position
779386..779964
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AA seq
192 aa
AA seq
DB search
MYKRLTVEDKVRVPPEHLGEEVEESVKAGLREEVEGTINEQLQGVVVGVETVNHVEGGTI
EPEDAGVHYNVEYTAIVFTPELHEVVNGEVVDITGFGAFIRIGPFDGLCHVSQVMDQYVN
HDEEAEMLVAEDSEFNLQVGDVVTARIIAVSLEKQETNKINLTMRQPGLGKDEWIEIYEE
EQAEAEEEQEDE
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgtacaagaggctgacagtagaggacaaggttcgagttcccccggaacatctcggtgag
gaagtcgaagaaagcgtaaaagcaggactccgagaagaggtagaaggaacgataaacgag
cagcttcaaggggttgttgtaggagttgaaaccgtcaaccatgtagagggcggaactata
gagccagaagacgctggcgtacactacaacgtagagtatactgcgattgttttcactcca
gaactccacgaagttgtaaacggagaagtagtagatattacaggcttcggagcattcatc
cgtatcggaccgttcgacggactatgccacgtcagccaagtaatggaccagtacgtcaac
catgatgaagaagcagagatgcttgtagcagaggactcagagttcaacctacaggtcgga
gacgttgtaaccgccaggatcatcgcagtcagccttgaaaaacaggagaccaacaagatc
aacctgacaatgagacagccaggtctcggtaaagacgaatggatcgaaatttacgaagaa
gaacaggccgaagccgaagaggaacaagaagatgagtga
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