Nocardioides sp. L-11A: QJ852_02175
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Entry
QJ852_02175 CDS
T10892
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nocd Nocardioides sp. L-11A
Pathway
nocd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QJ852_02175 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocd03400
]
QJ852_02175 (recD)
Enzymes [BR:
nocd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QJ852_02175 (recD)
DNA repair and recombination proteins [BR:
nocd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QJ852_02175 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
AAA_11
UvrD_C_2
RecD_N
Viral_helicase1
UvrD-helicase
Helicase_RecD
AAA_22
PhoH
SH3_13
nSTAND3
AAA_28
AAA_16
NACHT
DEAD
Herpes_Helicase
SLFN-g3_helicase
NTPase_1
Mg_chelatase
AAA_7
AAA_25
TrwB_AAD_bind
AAA_24
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
WGX97251
LinkDB
All DBs
Position
477220..479040
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AA seq
606 aa
AA seq
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MTELFEPTSHHDPRLARGARGLLGSFNAAGVVDAADVRVAERVAALAGEHDDRVLLAAAL
AVRSVRGGSVGLDLAALPDPADLPDLPDLPDLAWPDRADWTAAIEASALVAAEVLHVEHD
LVYLDRYHRLERQVATDLAARLGRRATPAVDEGVLAATLQRVSGGHLSREQAAAVEHAAR
HRTTVLTGGPGTGKTTTVARLVLALADQFAVAHDRRMSIALAAPTGKAATRLQEAVTAEL
GALGALGDGEHQVAPPEAMTLHRLLGWRPDNATRFRHDRGNRLKYDLVVVDEASMVDLTM
MARLLEAVRTDSRLVLVGDPRQLTSVGAGAVLSDLVAGFAAHPDSPVVALTENHRSTEEI
KELAAALRDDSPDLDETADRVLEVLRAGTGEVVWVETDDPVTALQDECTAAALRVREAAL
GAGAEAALAEIEGFRLLCAHRDGPYGVRVWNRHVEQWLAAELGAPLGSAWYAGRPLLVTS
NDYALDVYNGETGVVVTDPAGRPRAWIAGAGAPRPFAPGRLGAIETMHAMTIHKSQGSQA
TRIAVLLPEEGSRLLSRELFYTAVTRARASLLVVGSEAAVRAAVTTTAQRATGLRHRLTD
VPEVAG
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagctgttcgagcccacctcccaccacgatccccgcctggcccgcggtgcccgg
ggcctgctcggttccttcaacgccgcgggcgtggtcgacgccgccgacgtgcgggtggcc
gagcgggtcgccgccctggccggcgagcacgacgaccgggtgctgctcgccgcggccctc
gccgtccgctccgtgcggggtggatcggtcggcctcgacctcgccgcgctgcccgatccg
gcggacctgcccgacctgcccgacctgcccgacctcgcctggccggaccgtgcggactgg
acggccgcgatcgaggcgtccgcgctggtcgccgccgaggtgctccacgtcgagcacgac
ctggtctacctcgaccgctaccaccggctcgagcggcaggtcgccaccgatctcgccgcc
cggctcggccggcgcgcgaccccggccgtcgacgagggcgtgctggccgcgacgctgcag
cgggtcagcggcgggcacctcagtcgcgagcaggccgcggcggtcgagcatgccgcccgg
caccgcacgacggtcctcaccggtggcccgggcacgggcaagaccaccaccgtcgcgcgg
ctggtgctggcgttggccgaccagttcgcggtcgcccacgaccggcggatgtcgatcgcg
ctggccgccccgaccggcaaggcggcgacccggctgcaggaggcggtgacggccgagctc
ggcgcgctgggtgcgctcggcgacggcgagcaccaggtcgcgccccccgaggcgatgacg
ctccaccggctgctcggctggcgccccgacaacgcgacccggttccgccacgaccgcggc
aaccggctcaagtacgacctggtcgtcgtcgacgaggcgtccatggtcgacctgacgatg
atggcccgactgttggaggcggtccggaccgacagtcggctggtgctcgtcggcgacccg
cgccagctcacctccgtcggcgccggcgcagtgctctccgacctggtcgccgggttcgcg
gcgcatcccgactccccggtggtcgccctgaccgagaaccaccgctccaccgaggagatc
aaggagctcgccgcggccctgcgcgacgactcgccggacctcgacgagacggccgaccgg
gtgctcgaggtgctccgggccggcaccggcgaggtcgtctgggtcgagaccgacgacccg
gtcacggccctgcaggacgagtgcaccgcggcggcgctgcgcgtgcgcgaggccgcgctc
ggggccggtgccgaagccgccctcgccgagatcgagggcttccggttgctgtgtgcccac
cgcgacggcccctacggcgtgcgggtctggaaccggcatgtcgagcagtggctcgccgcc
gagctcggagcccccctcggctcggcctggtacgccggccgcccgctcctggtcaccagc
aacgactacgccctcgacgtctacaacggcgagaccggcgtcgtcgtcaccgaccccgcg
ggccgcccccgcgcctggatcgccggtgccggcgctcctcgccccttcgccccgggccgg
ctgggcgcgatcgagaccatgcatgcgatgaccatccacaagagccagggcagccaggcc
acccggatcgcggtcctgctgcccgaggagggctcgcgcctgctgagccgcgagctgttc
tacaccgccgtcacccgcgcccgggcgagcctgctcgtggtcggctcggaggccgccgtc
cgcgccgcggtgacgacgaccgcccagcgcgccaccgggctgcggcatcgcctcacggac
gtccccgaggtcgccggatag
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