Nocardioides sp. L-11A: QJ852_16345
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Entry
QJ852_16345 CDS
T10892
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nocd Nocardioides sp. L-11A
Pathway
nocd03030
DNA replication
nocd03430
Mismatch repair
nocd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QJ852_16345
03430 Mismatch repair
QJ852_16345
03440 Homologous recombination
QJ852_16345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocd03032
]
QJ852_16345
03400 DNA repair and recombination proteins [BR:
nocd03400
]
QJ852_16345
Enzymes [BR:
nocd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QJ852_16345
DNA replication proteins [BR:
nocd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QJ852_16345
DNA repair and recombination proteins [BR:
nocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QJ852_16345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
DEDDh_C
TMV_coat
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
WGX94720
LinkDB
All DBs
Position
3401500..3403221
Genome browser
AA seq
573 aa
AA seq
DB search
MTAAPISGTRRWDAQRGFDELGRPLHDVTFCVVDLETTGGSPGDGDMITEIGAVKVRGGE
VLGEFQTLVNPHTAIPAFIAVLTGITNGMVADAPPIRSALPAFLEFAAGSVLVAHNARFD
VGFLKHDALRLDIAWPDFDVLDTVKLARHVVSRDEAPNHKLSSLARVFRSGTTPNHRALA
DARATVDVLHGLMERLGGLGVHTLEELQGYSSKVASAARRKRHLAEHLPHAPGVYLFRDD
SSRVLYVGTSRDLRRRVRSYFTASEKRTRIGEMVQIASSVSAVECATPLEASVRELRLIA
EHKPPYNRRSRHPEKVTWLKLTREPWPRLSLVKRVLDDDADYLGPFSSRAAAESSLAALH
EVFPIRQCTDRLGRQPRRSACVLAEMGRCLSPCDGSVDPQTYAAVVRQLRDTLLRRPDDV
VDLVHARMSALAAEERFEEAAHHRDRLADFVRAAARNQRLTALTGCPEVTAARREDDGRW
AVHVVRHGRLAAAGVIPAGADAVAYVDGLRATAETVLPTIGPTPAATAEESERILRWLES
PGVRLVDVVGEWACPVQGAGRHATAFLSTRVSP
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagcacccatcagcggcacacggcggtgggatgcgcagcgcggcttcgacgag
ctcggccggccgctgcacgacgtgaccttctgcgtcgtcgacctcgagaccaccggcggc
tcgcccggcgacggcgacatgatcaccgagatcggcgcggtgaaggtccgcgggggcgag
gtgctgggcgagttccagaccctggtcaacccgcacaccgccatcccggccttcatcgcc
gtgctcaccggcatcaccaacggcatggtcgccgacgccccgccgatccggtcggcgctg
ccggcgttcctggagttcgccgccggctccgtgctcgtcgcccacaacgcccgcttcgac
gtcggcttcctcaagcacgatgcgctgcgcctcgacatcgcgtggcccgacttcgacgtc
ctcgacaccgtcaagctcgcccgccatgtggtgtctcgcgacgaggcgcccaaccacaag
ctctcgtcactggcccgcgtcttccggtccggcaccacccccaaccaccgcgcgctggcc
gacgcccgggccaccgtcgacgtgctgcacggcctcatggagcgcctcggcgggctgggg
gtccacacgctcgaggagctgcagggctactccagcaaggtcgcgagcgccgcgcgccgc
aagcggcacctcgccgagcacctcccccacgcccccggcgtctacctcttccgcgacgac
agctcccgggtgctctacgtcggcacgtcgcgcgacctgcgccgccgggtccgcagctac
ttcaccgcctcggagaagcgcacccggatcggcgagatggtccagatcgcctcgtcggtg
agcgcggtcgagtgcgcgaccccgctggaggcgtcggtccgcgagctgcgcctgatcgcc
gagcacaagccgccctacaaccgccgctcccgtcatccggagaaggtcacctggctcaag
ctcacccgggagccgtggccgcggctgtccctggtcaagcgggtcctcgacgacgacgcc
gactacctcggcccgttctcctcgcgcgcggcggcggagagctcgctggcggccctgcac
gaggtcttccccatccggcagtgcaccgaccggctcggccggcagccgcggcgcagcgcg
tgcgtcctggccgagatggggcgctgcctgtccccgtgcgacggcagcgtcgacccgcag
acgtacgccgcggtcgtgcgccagctgcgcgacacgctcctgcgccgtcccgacgacgtc
gtcgacctcgtgcacgcccggatgtcggcgctggccgccgaggagcgcttcgaggaggcg
gcccaccaccgcgaccggctggccgacttcgtgcgcgcggccgcccgcaaccagcggctg
accgcgctcaccggctgccccgaggtgaccgcggcccgccgcgaggacgacggccgctgg
gcggtccacgtggtccgccacgggcggctcgccgccgccggggtgatccccgccggcgcc
gatgccgtcgcctacgtcgacggcctgcgcgccacggccgagaccgtgctgccgacgatc
ggcccgacccccgccgcgaccgccgaggagtccgagcggatcctgcgctggctcgagtcg
cccggggtgcgcctggtcgacgtcgtcggcgaatgggcctgcccggtccagggcgcgggt
cgccacgcgaccgccttcctgagcactagggtgagcccatga
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