Nocardioides sp. L-11A: QJ852_21330
Help
Entry
QJ852_21330 CDS
T10892
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nocd Nocardioides sp. L-11A
Brite
KEGG Orthology (KO) [BR:
nocd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nocd03016
]
QJ852_21330
Enzymes [BR:
nocd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QJ852_21330
Transfer RNA biogenesis [BR:
nocd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QJ852_21330
Prokaryotic type
tRNA splicing ligases
QJ852_21330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WGX95684
LinkDB
All DBs
Position
4433706..4434887
Genome browser
AA seq
393 aa
AA seq
DB search
MDKITPTLLSWASILEQGTRDQAMTTASMPFIHPHLALMPDAHLGLGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTRFTADELPADRRPLREAIERAVPLSAGAANQRISRSHTERRL
EELTAAAERAGFDPGRYAQRWELQLGTLGSGNHFIEVTVDEEQRVWLFLHSGSRGVGNRI
AQHHIEIARDLCAKWWIELPHKDLAYLAEGTDEFWAYIREMRWAQRYALLNREEMMDRVL
RQFAEWVGLGSADDVERLEEINCHHNYTEQERHFGKNVWLSRKGAINAERGRPGLIPGSM
GTASYVVSGLGNPVALNSAPHGAGREYSRSKARRTFTREQLREAMAGIEYRDTDAFIDEI
PAAYKDIDQVLADAADLVEVRHTLRQIVNVKGD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacaagatcaccccgacgctcctcagctgggcgtcgatcctcgagcagggcacccgc
gaccaggcgatgacgacggcgagcatgccgttcatccacccccacctcgcgctgatgccc
gacgcccacctgggcctgggcgcgacggtgggctcggtcatcccgaccctcggcgcgatc
atcccggccgcggtcggcgtcgacatcggctgcggcatgatcgccgtgcgcacccggttc
accgccgacgagctgccggccgatcggcgcccgctgcgggaggcgatcgagcgggcggtc
ccgctctcggccggtgcggccaaccagcgcatctcccgcagccacaccgagcgccggctc
gaggagctgaccgccgcggccgagcgggccggcttcgaccccggacggtacgcccagcgg
tgggagctgcagctgggcacgctcggctcgggcaaccacttcatcgaggtgacggtcgac
gaggagcagcgcgtgtggctgttcctgcactccggctcgcgaggcgtcggcaacaggatc
gcccagcaccacatcgagatcgctcgcgacctgtgcgcgaagtggtggatcgagctgccc
cacaaggacctcgcctacctcgccgagggcaccgacgagttctgggcgtacatccgcgag
atgcggtgggcacagcgctacgccctgctcaaccgcgaggagatgatggaccgggtgctc
cgacagttcgcggagtgggtgggcctcggctcggccgacgacgtcgagcggctcgaggag
atcaactgccaccacaactacaccgagcaggagcgccacttcggcaagaacgtgtggctc
tcccgcaagggcgcgatcaacgccgagcggggacggcccggcctgatcccgggatcgatg
ggcacggcgtcgtacgtcgtcagcggactcggcaatccggtcgccctcaactcggcaccg
cacggcgcggggcgggagtactcccgctcgaaggcgcgccggacgttcacccgcgagcag
ctgcgggaggcgatggcgggcatcgagtaccgcgacaccgacgcgttcatcgacgagatc
cccgcggcgtacaaggacatcgaccaggtgttggccgacgcggccgacctggtcgaggtc
cggcacacgctgcgccagatcgtgaacgtgaagggcgactga
DBGET
integrated database retrieval system
