Nocardioides sp. L-11A: QJ852_25595
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Entry
QJ852_25595 CDS
T10892
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nocd Nocardioides sp. L-11A
Pathway
nocd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJ852_25595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocd03019
]
QJ852_25595
03009 Ribosome biogenesis [BR:
nocd03009
]
QJ852_25595
Enzymes [BR:
nocd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QJ852_25595
Messenger RNA biogenesis [BR:
nocd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QJ852_25595
Ribosome biogenesis [BR:
nocd03009
]
Prokaryotic type
rRNA helicases
QJ852_25595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
adh_short
Motif
Other DBs
NCBI-ProteinID:
WGX96506
LinkDB
All DBs
Position
complement(5343253..5345022)
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AA seq
589 aa
AA seq
DB search
MSDQVSDPVSDAADQPPTFVDLGLGDRILKALKDIGYESPSAIQAATIPHLLEGRDVMGL
AQTGTGKTAAFALPILDQLDLSQKTPQALVLAPTRELALQVCEAFEKYAANLRGVHVLPV
YGGQGYGVQLSALRRGVHIVVGTPGRIMDHLDKGTLDLTELRFLVLDEADEMLNMGFAED
VETILADTPDDKQVALFSATMPKQIRSLSQTYLKNPVEIAIERKTRTAENIKQRYLMVSY
PQKVDALTRILEVENFEGAIVFVRTKNETETLAEKLRARGYSAAAINGDIVQAQRERTVN
QLKDGKLDILVATDVAARGIDVPRISHVFNYDIPTDTEAYVHRIGRTGRAGRSGDAISFI
TPRERYLLKHIEKATRSTLEQMQLPSVDAINESRLSRFDDQITAALESPQISFFRDVVGH
YIREHDVPEVDVAAALAIAMQGDTPLLLEAEPEPERRPRREFEDRGGRGDRGDRRDRDRG
DRRDRDRGDRGGRDRAPRSGGNFQAYKIQVGKRHRVEPRQIVGALANEGGLDRRDFGKIT
IRPDYSIVELPARLTDDQWERLKSTRISGKLIELAKDHGPPNRSRKPRD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaccaggtgagtgacccggtgagtgacgctgcggaccagcccccgaccttcgtc
gacctcggtctcggtgaccgcatcctcaaggccctcaaggacatcggctacgagtcgccg
tccgcgatccaggccgcgaccatcccgcacctgctcgaggggcgcgacgtgatgggcctc
gcccagaccggcaccggcaagaccgccgccttcgcgctgccgatcctcgaccagctcgac
ctctcccagaagaccccgcaggcgctcgtcctggcgcccacgcgtgagttggcgctgcag
gtctgcgaggcgttcgagaagtacgccgccaacctgcgcggcgtccacgtcctccccgtc
tacggcggccaggggtacggcgtccagctgtcggccctgcgccgcggcgtccacatcgtc
gtcggcacgcccggccggatcatggaccacctcgacaagggcacgctcgacctcaccgag
ctgcgcttcctcgtcctcgacgaggccgacgagatgctcaacatgggcttcgccgaggac
gtcgagaccatcctcgccgacaccccggacgacaagcaggtcgcgctgttctcggccacg
atgcccaagcagatccgctcgctgtcccagacctatctcaagaacccggtcgagatcgcc
atcgagcgcaagacccggactgccgagaacatcaagcagcgctacctgatggtcagctac
ccgcagaaggtggatgcgctgacccggatcctcgaggtcgagaacttcgagggcgcgatc
gtcttcgtgcgcaccaagaacgagaccgagaccctcgccgagaagctgcgcgcccgcggc
tacagcgccgcggcgatcaacggcgacatcgtccaggcccagcgcgagcgcaccgtcaac
cagctcaaggacggcaagctcgacatcctggtcgccaccgacgtcgcggcccgcggcatc
gacgtgccccggatcagccacgtcttcaactacgacatccccaccgacaccgaggcctac
gtccaccgcatcggccgcaccggccgcgccggccgcagcggtgacgcgatctccttcatc
accccccgcgagcgctatctcctcaagcacatcgagaaggccacccgctccacgttggag
cagatgcagctccccagcgtcgacgcgatcaacgagtcgcggctgagccgcttcgacgac
cagatcaccgccgccctcgagtcgccgcagatctccttcttccgcgacgtcgtcggccac
tacatccgcgagcacgacgtacccgaggtcgacgtcgccgccgcgctggcgatcgcgatg
cagggcgacaccccgctgctgctggaggccgagcccgagccggagcgccgtccgcgtcgc
gagttcgaggaccgcggcggccgtggcgaccgtggcgaccgtcgggaccgcgaccgtggc
gaccgtcgggaccgcgaccgtggcgaccgaggtggccgcgaccgcgccccgcgctccggc
ggcaacttccaggcctacaagatccaggtcggcaagcggcaccgggtcgagccccgccag
atcgtcggcgcgctcgccaacgagggcggcctcgatcgccgcgacttcggcaagatcacc
atccggccggactactcgatcgtcgagctgcccgcgcggctgaccgacgaccagtgggag
cggctcaagagcacccggatcagcggcaagctgatcgagctggccaaggaccacggcccg
ccgaaccgctcccgcaagccgcgggactga
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