Neobacillus oceani: V1499_19615
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Entry
V1499_19615 CDS
T11220
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
noce Neobacillus oceani
Brite
KEGG Orthology (KO) [BR:
noce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
noce03016
]
V1499_19615
Enzymes [BR:
noce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V1499_19615
Transfer RNA biogenesis [BR:
noce03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V1499_19615
Prokaryotic type
tRNA splicing ligases
V1499_19615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XOL50612
LinkDB
All DBs
Position
complement(3862862..3864094)
Genome browser
AA seq
410 aa
AA seq
DB search
MIKIKGAHTEATIFSNYPQDTALEQIEELCNQAFLKDAKISIMPDYHAGKGCVIGTTIQL
KDKVVPNLVGVDVGCGVLTVKLQDKKLDFNKLDQVIRSKVPSGIDVHTEETVGQIKTGFP
PVKEFKAEHILSESKSLHSLGTLGGGNHFIEVSADSDGHHYLTIHTGSRYVGSRIATYYQ
KVAISKLQSRDLTEIIEKLKAEGRQKEIQSVIHSYKEKTPVIPNDLAYLEGDDFHGYIHD
MKLAQAYAKANREEIARTIIDNLGFEEVDRFDTVHNYINTENLILRKGAVSAQKGERLII
PINMRDGSILAVGKGNEEWNYSAPHGAGRLLSRSKARKALSMDDFHTTMKGIWTTSVSEE
TLDEAPMAYKSMDEILEKAEETVEIATIIKPVYNFKASEKYTPGRYKKKR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
gtgataaagattaaaggcgcgcacacggaggcgacgattttttccaattatcctcaggat
accgcgctcgaacagattgaggaattgtgcaatcaggctttcttgaaggacgcgaagatt
agcattatgccggactatcatgcaggaaaaggctgtgtgattggaaccaccatccaattg
aaggataaggttgtcccgaacttggtcggggttgatgttggctgcggcgtccttaccgta
aagcttcaggataaaaaactagacttcaataaactggatcaggtcattcggagcaaggta
cctagtggaattgatgttcatactgaggaaaccgtggggcaaatcaagacgggttttcct
cctgtaaaagaatttaaagcagagcatatattaagcgaaagtaaaagcttgcactccctt
ggaacgcttggcgggggtaatcacttcatcgaggtttccgctgattctgacggacatcat
tatttgaccatccataccgggagccgctatgtcggatctagaatcgccacctattatcaa
aaggtcgcaatttctaaactgcaaagcagggatttaacagagattattgaaaaactgaaa
gcagaaggccgccaaaaggaaatccagagcgtcattcatagctacaaagaaaaaactcct
gtcattccaaatgacttagcttatttggaaggcgatgattttcacggttacatccacgac
atgaaactggcccaggcgtatgcaaaagcgaacagggaagagattgcgcggactattatt
gataatctggggtttgaggaggtggacagattcgatacggttcataattatattaataca
gaaaacctcattctaagaaaaggagccgtttccgcccaaaaaggggaacgcctcatcatt
ccaatcaacatgagggacggatcaattcttgcagtcggaaaaggcaacgaagaatggaat
tactccgcgccgcatggggccggccgcctccttagccgctcaaaagcaaggaaagcatta
agcatggacgatttccacacaacgatgaaaggcatttggacgacatccgtttccgaggag
acgttggacgaagcaccaatggcttacaaatcaatggatgaaattttggaaaaagccgag
gaaaccgttgaaatagccacaatcataaagcctgtctataactttaaagcaagcgaaaaa
tatactccaggaagatacaaaaagaaaagatga
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