Neobacillus oceani: V1499_20630
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Entry
V1499_20630 CDS
T11220
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
noce Neobacillus oceani
Pathway
noce02020
Two-component system
noce02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
noce00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V1499_20630 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V1499_20630 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noce03021
]
V1499_20630 (rpoN)
Transcription machinery [BR:
noce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V1499_20630 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_23
HTH_21
MarR_2
HTH_Crp_2
Sigma70_r4
HTH_Tnp_ISL3
SpGH101_helical
Motif
Other DBs
NCBI-ProteinID:
XOL50799
LinkDB
All DBs
Position
complement(4066920..4068227)
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AA seq
435 aa
AA seq
DB search
MNMRIGLLQQQQTRLSMTQELSQAIALLQYSAQELASFLEARALENPLLEVMPSGQSKDR
PRKTTYREKQNDINGIASETGTTLEEHLLSQLKPGRFQKDEQKLIRQVILNIDENGYFRG
DINEIAVISNASPAKVEECLWEIQQLDPPGIGARNLQECLLLQLDRNGEGSPLAHVIVKG
FFSEFAEKKWKKLAKELKVSLKEIQGIYDLMQKLNPRPGADFYQERAAYLVPDVVADCVN
GQWRVHLVEGNLPAIGFNDDMFHSLTSSGDEQAIKFLQEKYQDYQWLAKSIRQRNDTILK
VAGKIIEKQPYFFAEAKGQLMPLTMKEVADCLDIHESTVSRAVREKYLGTPFGTFELKSF
FSSGIGTVSDSSASSAQVKKLIAAIIGHEDKRQPVSDQEITNMLKKNEGLVISRRTVAKY
REQLGIASSSKRKRF
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgaggattggacttttgcaacagcagcagacaagattgtcaatgacgcaggaa
ttgtcccaggcaattgccctgctccaatatagtgcccaggagctggcgagctttctggaa
gcaagggcgcttgaaaatcccctgcttgaagtcatgccttccgggcagtcgaaagaccgt
ccaaggaaaacaacctacagagaaaaacaaaacgatataaatggaattgcatcggagacg
gggacgacgcttgaggaacatcttctttcccagctgaagcccgggcgctttcaaaaagac
gaacaaaaacttatacgccaggttatattgaatatagatgaaaatggttatttccgtgga
gatataaatgaaatcgctgtcatttcgaatgcaagcccagcaaaggtggaagagtgcctg
tgggaaattcagcagctggacccgccaggaataggcgcgagaaacctgcaggaatgcctc
ctccttcaacttgatagaaatggtgaaggatctcctttggcccatgtgatcgtaaaagga
ttcttttccgaatttgcggaaaaaaagtggaagaagcttgcgaaggaattaaaggtaagc
ctcaaggaaatacagggaatatatgaccttatgcaaaaattaaacccaaggcccggggct
gatttttatcaggaaagagctgcttatcttgttccagacgtggtggcggattgcgtgaat
gggcaatggcgcgtccatcttgttgaaggaaatctcccggcaatcggctttaacgacgat
atgttccattcactaacgtcaagcggcgatgagcaggcaatcaaatttctgcaggaaaaa
taccaggattaccaatggcttgcaaaaagtatcaggcagcggaacgatacaattttaaaa
gtggctgggaaaataattgaaaagcagccgtacttttttgcggaagcgaaggggcagctg
atgccgcttacgatgaaggaagttgctgattgcttggatatccatgaatcgaccgtcagc
cgcgctgtccgtgaaaaatacctcgggacgccatttggcacctttgaactgaagtcgttt
ttctcttccggaatcggcactgtctcggacagcagtgcatcctcggcccaggtgaaaaaa
ttgatcgctgcgattatcgggcatgaggacaagaggcagccagtttcagaccaagagatc
accaatatgctaaagaagaacgaggggcttgtcatttcgagaaggaccgtggccaagtat
cgggaacaactgggaatcgcctcttcttcaaaacggaaacgattttaa
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