Nocardioides sp. LMS-CY: KM427_00700
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Entry
KM427_00700 CDS
T10875
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl00260
Glycine, serine and threonine metabolism
nocl00630
Glyoxylate and dicarboxylate metabolism
nocl00670
One carbon pool by folate
nocl00785
Lipoic acid metabolism
nocl01100
Metabolic pathways
nocl01110
Biosynthesis of secondary metabolites
nocl01200
Carbon metabolism
Module
nocl_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
KM427_00700 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
KM427_00700 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
KM427_00700 (gcvP)
00670 One carbon pool by folate
KM427_00700 (gcvP)
Enzymes [BR:
nocl01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
KM427_00700 (gcvP)
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Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
Aminotran_1_2
DUF5529
Motif
Other DBs
NCBI-ProteinID:
QWF22308
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Position
143931..146792
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AA seq
953 aa
AA seq
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MPDQSPPSDSRDIFARRHIGPSADDVACMLKEVGYGSLEDLIDVAVPEGIRTAGLRLPPA
ATEPEAADELRALSAANNVTVPMIGLGYYPTSTPSVIRRNVLESPAWYTAYTPYQPEISQ
GRLEALLNFQTMVGDLTGLPTSNASLLDEGTAVAEAIMVMRRAVASSSNRVLVDADLFPQ
SIAVAQTRAAALGIEVALFDADSALPDVDYFGVVVSYPGCSGEVRNFSSAIRQAHRSGAL
VTIAADLLALTLLSPPGDLGADIAVGSTQRFGVPLFYGGPHAGYIAIRDGLERHLPGRLV
GVSIDAHAQPAYRLALQTREQHIRRDRATSNICTAQVLLAVVASLYAVYHGPEGLTAIAE
RIHRYALRVAAALRRRGYSVINEAFFDTIVVYTPGRAAEIVANAHTDGILLRLVDDEHVG
ISCSETTTPEHLKRILASFGEDAVELTEVTPDLRSTIPPALRRTSTFLTHPVFSQHRSET
TMLRYLRELADRDFALDRGMIPLGSCTMKLNASTEMEPVSLSGFADLHPFAPAEDALGYA
ELVRQLESWLAEITGYAAVSIQPNAGSQGELAGLLAIRAYHRDQEQPDRDVCLIPASAHG
TNAASAVLAGMRVVVVASNDDGTIDMGDLEAKCETHSDRLAAVMVTYPSTHGVYEEGITR
LCELVHHHGGQVYVDGANLNALLGVAKPGEFGGDVSHLNLHKTFCIPHGGGGPGVGPVAV
AAHLVPYLPTHPSHPDPHRRHGVGAVSAAPYGSAGILPIPWAYIRMMGSEGLTRATMVAV
LAANYVATRLSGCFPVLYTGAKRLVAHECILDLRPLTASTGVTVEDVAKRLADYGFHAPT
VSFPVAGTLMIEPTESEGLREIDRFIDAMTAIRREIDDIAAGRWRVEDSPLRHSPHTAAA
LAGDWSRPYSRAEGAYPTGITRSKYWPSVGRVDQAHGDRHLVCSCPDPTAFEN
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaccagagcccgccgtcggactcacgcgacatctttgctcgccgccacatcggg
ccaagcgccgacgacgtcgcctgcatgctgaaggaagtcggctacgggagcctagaggac
ctgatcgacgtcgcagtgccggaaggcatccgaacggcgggactccgacttcccccagcc
gccacagagccggaagccgcggacgagcttcgcgccctcagcgccgcgaacaatgtcacg
gtcccgatgattggactcggctactaccccacgagcaccccttccgtcatccgccgcaac
gtgctggaaagtccggcctggtacaccgcatacaccccgtaccagccagagatcagtcag
ggccgattggaggcgttgctcaacttccagacgatggtcggcgacctgaccggtctgccc
acctcgaacgcctcgctgctcgacgaagggacggcggtcgccgaggcgatcatggtgatg
cggcgcgcggtggcgtcgtcctcgaaccgcgtgcttgtcgacgccgacctgttcccccag
tccattgccgtcgcccagactcgcgcggccgcgctcgggatcgaggtggcgctattcgac
gccgattcggcactgccagacgtcgactacttcggagtcgtcgtgtcgtacccgggatgc
tctggcgaggtgcgaaacttctcctccgccatccgccaagcccaccgcagcggagccctc
gtcactatcgccgcggacctgctggctctgaccctgctgtcaccccccggagacctcggc
gccgacatagccgtcgggtcgacccagcggttcggcgtgcccctattctacggcgggccg
cacgccgggtacatcgccatccgtgacggcctcgaacgacacctgcccggccggcttgtc
ggtgtctcgatcgacgcgcacgcccagccggcctaccgcctcgcgctgcagacccgcgaa
cagcacatcagacgggaccgggccacctccaacatctgcaccgcgcaggtactgctcgcc
gtggtcgcctccctgtacgccgtgtaccacggccccgaaggactcaccgccatcgcggag
cggatccatcggtacgccctgagagtcgcggcggcgctgcgccgccgcggctactccgtc
atcaacgaagcgttcttcgacacgatcgttgtctacacacccgggcgagcggccgagatc
gtcgctaacgcccataccgacggcatcctgctccgcctagtcgatgacgagcacgtcggg
atcagctgctctgagacgaccacaccggagcacctcaaacggatcctggcttcctttggc
gaggacgccgttgagctgacggaggtcacacccgacctgcgctctacgattccgccggca
ctgaggcgaacctcaactttcctgacgcacccggtattctcgcagcatcggtccgagacc
acgatgctgcggtacctgcgagagcttgcggaccgcgacttcgctctggaccgcgggatg
attcccctcggctcgtgcaccatgaagctgaacgcctccactgagatggagccggtgtcc
ctgtcgggtttcgccgacctccacccgttcgcgcccgccgaggacgccctgggctacgcg
gagctcgttcgtcagcttgagagctggctggccgagatcaccggctacgcggccgtttcc
atccagccgaatgccgggtcccagggcgagctggctggactgctcgccatccgcgcctac
catcgcgaccaagagcagcctgaccgcgacgtgtgcctgatccccgccagtgcccacgga
accaacgcggcgtccgcggtcctcgctggcatgcgggtggtcgtcgtcgcctccaacgac
gacggcaccattgacatgggtgatctggaggcgaagtgcgagacgcattcggaccggctc
gccgctgtcatggtcacctacccgtcgacccacggcgtgtacgaggaaggcatcacccgt
ctctgcgaactggtccatcaccacggcggccaggtctatgtggacggcgcgaacctcaac
gcgctgctcggcgtagccaagcccggcgagttcggcggcgacgtctcccacctcaacctg
cacaagacgttctgcatcccccacggcggcggggggccgggcgtcggcccggtcgcggtc
gctgcccacctggtgccctacttgccgacacacccaagccatcccgacccacatcgtcgt
cacggagtcggtgcggtcagcgccgcaccctacggatcagccggcattctgccgatcccg
tgggcctacatacggatgatgggctccgagggtctgactcgagccacgatggtcgccgtc
ctggccgccaactacgtcgccacgcgcctgtctggctgcttccctgtcctatacaccggt
gccaagcgcctggtggcccacgagtgcatcctcgacctacgtcccctgacggcgtcgacc
ggcgtcaccgtcgaagacgtcgccaagcgcctcgctgactacggcttccacgcaccgacg
gtcagtttccctgtcgccggaaccctcatgatcgagccgactgaaagtgagggtctgcgc
gagatcgatcggttcatcgacgccatgaccgccatccgccgagagatcgacgacatcgcc
gctggcagatggcgagtcgaggacagcccgctgaggcactccccccacacagccgccgcg
ctcgccggtgactggagccggccctacagccgcgccgagggcgcgtatccgaccggcatc
acccggagcaagtactggcccagtgtcggtcgagtcgaccaagcccacggcgaccgccac
ctggtttgctcctgccccgaccccaccgcattcgagaactga
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