Nocardioides sp. LMS-CY: KM427_06775
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Entry
KM427_06775 CDS
T10875
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nocl Nocardioides sp. LMS-CY
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocl03019
]
KM427_06775 (hrpA)
Enzymes [BR:
nocl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KM427_06775 (hrpA)
Messenger RNA biogenesis [BR:
nocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KM427_06775 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
NACHT
WHD_HA2
nSTAND_NTPase5
nSTAND3
SLFN-g3_helicase
T2SSE
ResIII
AAA_30
AAA_25
PhoH
AAA_23
ABC_tran
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QWF23419
LinkDB
All DBs
Position
1417931..1421758
Genome browser
AA seq
1275 aa
AA seq
DB search
MLGTMGPVMTELQITYPPELPVTQRRDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLEL
GRGSTGLIGHTQPRRIAARSVAERIASELGTELGDLVGYQVRFTDRTSRTSRVKLMTDGI
LLAELQRDRQLRKYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLIITSATIDVDRF
AQHFDAPVVEVSGRTYPVEIRYRPLMALRDGSSLASSGTESSIDDEGEVVVRDQTEAIVE
AVKELSAEGPGDVLVFLPGEREIRDTADALKDLPRTEILPLYSRLTAAEQHRVFSSHGNA
VRRVVLATNVAETSLTVPGIRYVVDTGVARISRYSVRTKVQRLPIEPISQASANQRSGRC
GRVEAGIAIRLYSEEDFESRPEFTDPEILRTNLASVILQMTSLGLGDIARFPFVEPPDRR
NVQSGVQLLEELGALRHGTLSKTGRRLARLPIDPRLARMIIEAERLGCVREVIVIAAALS
LQDPRERPGADHPKEQAQADQLHARYKADGSDFLTWLNLWRYLKEQQQELSSSAFRRMCR
REFLNYLRVREWQDFESQLRQVCKEMKIQVGKGRGFETGASAPSSTTEFDSDGIHQALLS
GLLSHIGLLEEREKEKRGPREYLGARGSRFAIFPGSVLHRKNPQFLMAGELVETSRLWAR
QNAAIKPEWAERLGGDLVKRTYSEPHWSRKRTAVMAYERATLYGVPLVADRLVSYGKVDV
ALARELFIRHALVYGEWHTRHRFMDTNRRLLEEAEELEHRARRRDIVVDEHTLFDFYDAR
VGADVVSGAHFDQWWKQARRTQPELLTFDPAMLTHDTADEVRATDYPERWEGEGLTFPIS
YHFEPGAAADGLTIDVPVATLNRVEADDFSWNVPGLRKELVTSLIRSLPKSLRVSFVPAP
DKAREFLAAVPPGEEPLLDALERWCRSTSGVVVPRDAWDWSKVPEHLRPTYRVVGDDGQE
QARGKDLESLKAPLRGQFAEAIAEVASDSGLARTGETSWVFGTIEPSFTQKRAGHEVQVF
PALVDEGASIGLQVFGSADEQEARHRLGVRRLLLLALPSPAKAILDGLGNAEKLGLAGSP
YPGVADLLEDIRAAVVQAVVDARPAVRDPAAYDALLAEAARDHEAQVRVTMADVVRVLDA
WRRTEKSLSGRAEMAMLPALTDMRAQLARLVHPGFVGEAGAAQLRRYPAYLTALEQRREK
LPGQLNRDRQLMDQLAELQDAYLHQVEALPEGRPPGAQLRQVRWMLEEYRVSLWAQQLGT
PYPVSDQRIRRTLAG
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgcttggcacaatgggtccagtcatgaccgagctccagatcacgtacccaccggagctt
ccggtcacccagcgccgcgacgacatcgccgcggccatccgcgaccaccaggtcgtgatc
gtcgcgggagagaccgggtcgggcaagaccacccagctgccgaagatctgtctcgagctc
ggccgcgggagcaccggtctgatcggccacacccagccgcgccggatcgccgcccgctcg
gtcgccgagcggatcgccagcgagctgggcaccgagctcggcgacctggtcggctaccag
gtccgcttcaccgaccggacctcccggaccagccgggtgaagctgatgaccgacggcatc
ctgctcgccgagctgcagcgcgaccggcagctgcgcaagtacgacacgatcatcatcgac
gaggcccacgagcgcagcctcaacatcgacttcctgctcggctacctcaagcggctgctg
ccgcgccgccccgacctgaagctgatcatcacttccgcgacgatcgacgtggaccggttc
gcgcagcacttcgacgcgccggtggtcgaggtctccggccggacctacccggtcgagatc
cgctaccggccgctgatggcccttcgagacggctcgtccctcgcctcctcagggaccgag
tcttcaatcgacgacgagggcgaggtcgtcgtccgggaccagaccgaggcgatcgtcgag
gcggtgaaggagctctcggccgagggtccgggtgacgtgctggtcttcctgcccggcgag
cgcgagatccgcgacaccgccgacgcgttgaaagacctgccgcgcaccgagatcctgccg
ctctactcgcgcctgaccgccgccgagcagcatcgcgtcttcagctcgcacggcaacgcc
gtacgccgggtggtgctggccaccaacgtcgccgagacctcgctgaccgtgcccgggatc
aggtacgtcgtcgacaccggcgtcgcccggatcagccgctactcggtgcgcaccaaggtg
cagcggctgccgatcgagccgatcagccaggcctcggccaaccagcgatccggccggtgc
ggccgcgtcgaggcgggcatcgcgatccggctctactcggaggaggacttcgagagccgg
ccggagttcaccgaccccgagatcctgcgcaccaacctggccagcgtcatcctccagatg
acgtcgctcggcctgggtgacatcgcgcggttccccttcgtcgagccgcccgaccgccgc
aacgtgcagtccggcgtgcaattgctcgaggagctcggcgcgctgcgccacggcacgctc
tcgaagaccgggcgtcggctcgcgcggctgccgatcgacccccgcctggcacggatgatc
atcgaggccgagcgcctcggctgcgtgcgcgaggtgatcgtgatcgcggccgcgctgtcg
ctccaggacccacgcgagcgaccgggtgccgaccatccgaaggagcaggcgcaggccgac
cagctgcacgcccgctacaaggccgacggcagcgacttcctgacctggctcaacctctgg
cgctacctcaaggagcagcagcaggagctgtcctcctcggcgttccgacggatgtgcaga
cgcgagttcctcaactacctgcgggtccgggagtggcaggacttcgaatcgcagctccgc
caggtctgcaaggagatgaagatccaggtcggcaagggacgaggtttcgagacaggcgct
agtgcgccttcctcaaccaccgagttcgatagtgacggcatccaccaggcgctgctgtcg
gggctgctctcgcacatcggcctgctcgaggagcgggagaaggagaagcggggaccccgg
gagtacctcggcgcccgcggctcccgcttcgcgatcttcccgggcagcgtgctgcaccgc
aagaacccgcagttcctgatggccggcgagctcgtcgagaccagcagactgtgggcccgg
cagaacgccgcgatcaagcccgagtgggccgagcggctcggcggcgacctcgtgaagcgc
acctactccgagccgcactggagcaggaagcgcaccgccgtcatggcctacgagcgcgcc
acgctgtacggcgtaccgctcgtggccgaccggctcgtctcctacggcaaggtcgacgtc
gcgctcgcccgcgagctgttcatccggcacgccctggtctacggagagtggcacaccagg
cacaggttcatggacaccaaccgtcggctgctcgaggaggccgaggagctcgagcaccgg
gcccggcgccgcgacatcgtcgtcgacgagcacacgctcttcgacttctacgacgcccgg
gtcggcgccgacgtggtcagcggcgcacacttcgaccagtggtggaagcaggcgcgccgg
actcagccggagctgctgaccttcgacccggcgatgctcacccatgacacggccgacgag
gtccgggccaccgactatccggagcggtgggagggcgaaggcctgaccttcccgatcagc
taccacttcgagcccggcgccgcggccgacgggctgacgatcgacgtgccggtcgcgacc
ctcaatcgggtcgaggccgacgacttctcctggaacgtgccgggcctgcgcaaggagctg
gtcaccagcctgatccgcagcctgccgaagagcctgcgggtcagcttcgtgccggccccc
gacaaggcgcgcgagttcctggcggcggtcccgccgggggaggagccgctcctcgacgcc
ctggaacgttggtgccggtcgacgagtggggtcgtcgtgccgcgcgacgcgtgggactgg
tcgaaggtgcccgagcacctgcgcccgacctaccgggtcgtcggtgacgacgggcaggag
caggcgcggggcaaggacctcgagtcgctcaaggcaccgttgcgcgggcagttcgcggag
gcgatcgccgaggtggccagcgatagcgggctggcccgcaccggcgagacgtcgtgggtc
ttcggcaccatcgagccgtcgttcacccagaagcgcgcgggccatgaggtgcaggtcttc
ccggcgctggtcgacgagggggcgagcatcggcctccaggtcttcggatccgccgacgag
caggaggcgcggcaccggctcggcgtacgccgcctgctgctgctcgcgctgccgtcgccg
gccaaggcgatcctcgacgggctcggcaacgccgagaagctcggcctcgccggatcgccc
tacccgggcgtcgcggacctgctggaggacatccgggccgccgtcgtgcaggcggtcgtg
gacgcgcggcccgcggtgcgcgacccggcggcgtacgacgcgctgctggcggaggcggcc
cgcgaccacgaggcgcaggtgcgggtgaccatggccgacgtggtccgggtgctcgacgcc
tggcgccggacggagaagtcgctcagcggccgggccgagatggcgatgctgccggcgctc
accgacatgcgggcgcagctcgcgcggctggtgcaccccggcttcgtcggcgaggcgggc
gcggcccagctgcgccgctatccggcgtacctgaccgcgctcgagcagcgccgcgagaag
ctgcccggccagctcaaccgcgatcggcagctgatggaccagctggcggagctccaggac
gcctacctgcaccaggtcgaggcgctgccggaggggcggccgccgggcgcccagctgcgg
caggtgcggtggatgctggaggagtaccgcgtctcgctgtgggcgcagcagctcggcacg
ccctaccccgtcagcgaccagcgcatccgacgtacgctcgcagggtga
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