Nocardioides sp. LMS-CY: KM427_07390
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Entry
KM427_07390 CDS
T10875
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KM427_07390 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocl03400
]
KM427_07390 (ligD)
Enzymes [BR:
nocl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KM427_07390 (ligD)
DNA repair and recombination proteins [BR:
nocl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KM427_07390 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QWF23533
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All DBs
Position
1552545..1553456
Genome browser
AA seq
303 aa
AA seq
DB search
MPAEKQEVRVQVDGRTLTISNLHKVLYPRTGYTKGEVLNYYAQVSPVLLPHLRDRCVTRI
RWPHGVQEASFFEKNTPAGTPSWVRTAKVPTTGSRARSSSDTLVFPIVDDLATLTWLVNL
AALELHVHQWTVGRNGRPRNADRLVIDLDPGEPAGLHECCRVALLVRDKLAERDLTAKPV
TSGSKGLHLYADLPGRLPSDESTALAREVAEELQGEHPTLVTATMTKARRTGKVFLDWSQ
NAGSKTTISPYSLRGRERPTVATPVGWHEIEEGAEDPLGLEQFTPEQVLERVAEHGDLFG
ASG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgccggccgagaagcaggaggtccgcgtccaggtcgacggccggaccctcacgatcagc
aacctccacaaggtgctctacccgcgcaccggctacaccaagggcgaggtgctcaactac
tacgcccaggtctcgccggtgctgctgccgcacctgcgcgaccggtgcgtcacccggatc
cgttggccgcacggcgtccaggaggcgagcttcttcgagaagaacacccccgccggcacg
ccctcgtgggtgcggacggcgaaggttcccacgaccgggtcccgcgcccggtcctcgagt
gacacgctcgtcttcccgatcgtcgacgacctcgccacgctcacctggctggtcaacctc
gccgcgctcgagctgcacgtgcaccagtggacggtcgggaggaacggccgcccccgcaac
gccgaccgcctcgtcatcgacctcgaccccggcgagcccgccggcctgcacgagtgctgc
cgggtcgcgctgctggtgcgcgacaagctcgccgagcgggacctgaccgccaagccggtc
accagcggcagcaagggcctgcacctgtacgccgacctgcccggccggctgccctctgac
gagtccacggcactcgcgagggaggtcgccgaggagctccagggcgaacacccgacgctg
gtcacggccaccatgacgaaggcccggcgtaccgggaaggtcttcctcgactggtcccag
aacgccggctcgaagaccacgatctcgccgtactcgctgcgcggccgcgagcggcccacg
gtcgccacgccggtcggctggcacgagatcgaggagggcgcggaggatccgctgggcctg
gagcagttcacgcccgagcaggtgctcgaacgggtcgccgagcacggtgacctgttcggc
gcgagcgggtga
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