Nocardioides sp. LMS-CY: KM427_08985
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Entry
KM427_08985 CDS
T10875
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KM427_08985 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocl03021
]
KM427_08985 (rho)
03019 Messenger RNA biogenesis [BR:
nocl03019
]
KM427_08985 (rho)
Transcription machinery [BR:
nocl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KM427_08985 (rho)
Messenger RNA biogenesis [BR:
nocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KM427_08985 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Motif
Other DBs
NCBI-ProteinID:
QWF24670
LinkDB
All DBs
Position
1867338..1869167
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AA seq
609 aa
AA seq
DB search
MLIADLKSMAAGLGISGSGSMKKAQLVEAIKAHQSGGGQPRQDQPQDQPRREQEKPERPR
QEKREPERPQHDPQQDQQQDRQQDKQQDKQQDKPERSREKSADQAGQSGQPRQERQARRE
RGADQQRDQQRDQQREKQQDAKQDKQQDGKQQSRQDRQQQDRQQQDRQQQDRQQQDRQAQ
PSQDRHQQHGDGDDGDDDGSGRRNRRRRGRDRNRTVGGRNEPDTTILEDDVLVPAAGILD
VLDNYAFVRTSGYLAGADDVYVSLSIVRKFGLRRGDAIVGQVRQPREGERREKFNPMVRI
DAVNGADPEAAKHRVEFAKLTPLYPSERLRLETGPENMIGRVIDIAAPIGKGQRGLIVSP
AKAGKTMILQSIAKSITTNNPECHLMVVLVDERPEEVTDFERSVKGEVISSTFDRPPSDH
TTVAELAIERAKRLVELGHDVVVLLDGITRLGRAYNLAAPASGRILSGGVDSAALYPPKK
FFGAARNIEDGGSLTILATALIESGSKMDEVIFEEFKGTGNMEIRLRRDFADKRLFPAID
AVQSGTRREELLMSKEELAIVWKLRRVLSSLDGQQALELLLERLKKSQTNIEFLMQVQTT
TPTVSGREE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcgcggacctgaagtcgatggccgcggggctggggatctcgggctcgggctcg
atgaagaaggcccagctggtcgaggccatcaaggcccaccagagcggcggcggtcagccg
cgccaggaccagccgcaggaccagccccggcgggagcaggagaagccggagcgcccgcgg
caggagaagcgggagccggagcgcccccagcacgacccgcagcaggaccagcagcaggac
cggcagcaggacaagcagcaggacaagcagcaggacaagcccgagcgctcgcgggagaag
tccgcggaccaggcgggccagtcgggccagccgcggcaagagcggcaggcccggcgcgag
cgcggtgcggaccagcagcgggaccagcagcgggaccagcagcgagagaagcagcaggac
gccaagcaggacaagcagcaggacggcaagcagcagagccggcaggatcgccagcagcag
gaccgtcagcagcaggaccgccaacagcaggaccgccaacagcaggaccgccaggcccag
ccgtcccaggaccggcaccagcagcacggcgacggtgacgacggcgacgacgacggtagc
ggccgccgcaaccggcgccgccgcggtcgcgaccggaaccgcactgtcggtggccgcaac
gagccggacaccacgatcctcgaggacgacgtcctggtcccggcggccggcatcctcgac
gtgctcgacaactacgcgttcgtgcgcaccagcggctacctcgcgggtgccgacgacgtg
tacgtgtcgctctcgatcgtgcgcaagttcgggctgcgccgcggcgacgcgatcgtcggc
caggtgcgccagccccgggagggtgagcgccgggagaagttcaacccgatggtccgcatc
gacgccgtcaacggtgccgaccccgaggcggcgaagcaccgggtggagttcgccaagctg
accccgctctacccctccgagcggctgcgcctggagaccgggcccgagaacatgatcggc
cgggtcatcgacatcgcggccccgatcggcaaggggcagcgcggcctgatcgtgtccccg
gcgaaggccggcaagacgatgatcctgcagtcgatcgcgaagtcgatcacgaccaacaac
ccggagtgccacctgatggtggtgctggtcgacgagcgccccgaggaggtcaccgacttc
gagcgctcggtcaagggcgaggtgatctcctcgacgttcgaccggccgccgagcgaccac
acgaccgtggcggagctcgcgatcgagcgggccaagcggctcgtcgagctcggccacgac
gtcgtggtgctgctcgacggcatcactcgcctcggccgggcctacaacctcgccgcgccg
gcgagcggccggatcctctccggcggcgtcgactccgctgcgctctacccgccgaagaag
ttcttcggtgcggcccgcaacatcgaggacggcggctcgctgaccatcctcgcgaccgcg
ctcatcgagagcggctcgaagatggacgaggtgatcttcgaggagttcaagggcaccggc
aacatggagatccggctgcgtcgcgacttcgccgacaagcggctcttcccggcgatcgac
gcggtccagtccggcacccgccgcgaggagctcctgatgagcaaggaggagctcgcgatc
gtctggaagctgcgccgcgtgctcagctccctcgatggccagcaggccctcgagctgctg
ctggagcggctgaagaagtcgcagaccaacatcgagttcctgatgcaggtccagacgacc
accccgaccgtgtccggtcgggaggagtga
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